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gpc5a [Golgi lumen]
Stable Identifier
R-DRE-2076556
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
Golgi lumen
Synonyms
Heparan(4)-GPC5, V5NES1
Locations in the PathwayBrowser
Expand all
Metabolism (Danio rerio)
Metabolism of carbohydrates (Danio rerio)
Glycosaminoglycan metabolism (Danio rerio)
Heparan sulfate/heparin (HS-GAG) metabolism (Danio rerio)
HS-GAG biosynthesis (Danio rerio)
NDST1-4 N-deacetylates GlcNAc residues in heparan (Danio rerio)
Heparan(4)-PGs [Golgi lumen] (Danio rerio)
gpc5a [Golgi lumen] (Danio rerio)
NDST1-4 can sulfate a glucosamine residue in heparan to form heparan sulfate (HS) (Danio rerio)
Heparan(4)-PGs [Golgi lumen] (Danio rerio)
gpc5a [Golgi lumen] (Danio rerio)
External Reference Information
External Reference
UniProt:V5NES1
Gene Names
gpc5a
Reference Genes
BioGPS Gene:559454 gpc5a
ENSEMBL:ENSDARG00000103647
KEGG Gene (Danio rerio):559454 gpc5a
Monarch:559454 gpc5a
NCBI Gene:559454 gpc5a
Reference Transcript
RefSeq:NM_001302236.1 gpc5a
Participates
as a member of
Heparan(4)-PGs [Golgi lumen] (Danio rerio)
Other forms of this molecule
gpc5a [extracellular region]
gpc5a [plasma membrane]
gpc5a [lysosomal lumen]
gpc5a [plasma membrane]
gpc5a [plasma membrane]
gpc5a [plasma membrane]
gpc5a [plasma membrane]
gpc5a [plasma membrane]
gpc5a [plasma membrane]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [Golgi lumen]
gpc5a [lysosomal lumen]
Inferred From
Heparan(4)-GPC5 [Golgi lumen]
(Homo sapiens)
Modified Residues
Name
O-xylosyl-L-serine (ChEBI:63651) at unknown position
Modification
beta-D-GlcA-(1->4)-alpha-D-GlcNAc-(1->4)-beta-D-GlcA-(1->4)-alpha-D-GlcN-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl-yl group
PsiMod Name
O-xylosyl-L-serine
PsiMod Definition
A protein modification that effectively converts an L-serine residue to O3-xylosylserine.
Cross References
RefSeq
NP_001289165.1
ZFIN
ZDB-GENE-140106-260
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