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col28a1d [endoplasmic reticulum lumen]
Stable Identifier
R-DRE-2173021
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
endoplasmic reticulum lumen
Synonyms
5Hyl-COL28A1, A0A060Q6E4
Locations in the PathwayBrowser
Expand all
Extracellular matrix organization (Danio rerio)
Collagen formation (Danio rerio)
Collagen biosynthesis and modifying enzymes (Danio rerio)
COLGALT1,COLGALT2 bind Lysyl hydroxylated collagen propeptides (Danio rerio)
COLGALT1,COLGALT2:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Collagen chain trimerization (Danio rerio)
Association of procollagen type XVIII (Danio rerio)
Alpha-1(XXVIII) chains [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
C-linked procollagen type XXVIII trimer [endoplasmic reticulum lumen] (Danio rerio)
Alpha-1(XXVIII) chains [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Galactosylation of collagen propeptide hydroxylysines by PLOD3 (Danio rerio)
PLOD3:Fe2+ dimer:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum membrane] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Galactosylation of collagen propeptide hydroxylysines by procollagen galactosyltransferases 1, 2. (Danio rerio)
COLGALT1,COLGALT2:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides dissociate from Lysyl hydroxylases (Danio rerio)
Lysyl hydroxylases:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
PLOD3 binds Lysyl hydroxylated collagen propeptides (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
PLOD3:Fe2+ dimer:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum membrane] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Procollagen lysyl hydroxylases convert collagen lysines to 5-hydroxylysines (Danio rerio)
Lysyl hydroxylases:Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Lysyl hydroxylated collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
5-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Secretion of collagens (Danio rerio)
Collagens and tropocollagens:Serpin H1 [endoplasmic reticulum lumen] (Danio rerio)
Collagens and tropocollagens [endoplasmic reticulum lumen] (Danio rerio)
Non-fibrillar collagens [endoplasmic reticulum lumen] (Danio rerio)
C-linked procollagen type XXVIII trimer [endoplasmic reticulum lumen] (Danio rerio)
Alpha-1(XXVIII) chains [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
External Reference Information
External Reference
UniProt:A0A060Q6E4
Gene Names
col28a1d
Reference Genes
BioGPS Gene:100332225 col28a1d
CTD Gene:100332225 col28a1d
ENSEMBL:ENSDARG00000087087
KEGG Gene (Danio rerio):100332225 col28a1d
Monarch:100332225 col28a1d
NCBI Gene:100332225 col28a1d
Reference Transcript
RefSeq:NM_001302249.1 col28a1d
Participates
as a member of
Homologues of 5Hyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
Other forms of this molecule
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
Inferred From
5Hyl-COL28A1 [endoplasmic reticulum lumen]
(Homo sapiens)
Modified Residues
Name
(2S,5R)-5-hydroxylysine at unknown position
PsiMod Name
(2S,5R)-5-hydroxylysine
PsiMod Definition
A protein modification that effectively converts an L-lysine residue to 5-hydroxy-L-lysine.
Cross References
RefSeq
NP_001289178.1
ZFIN
ZDB-GENE-160503-1
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