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col28a1d [endoplasmic reticulum lumen]
Stable Identifier
R-DRE-2173235
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
endoplasmic reticulum lumen
Synonyms
3x4Hyp-3Hyp-GalHyl-COL28A1, A0A060Q6E4
Locations in the PathwayBrowser
Expand all
Extracellular matrix organization (Danio rerio)
Collagen formation (Danio rerio)
Collagen biosynthesis and modifying enzymes (Danio rerio)
COLGALT1,COLGALT2:Galactosyl-hydroxylysyl collagen propeptides dissociates (Danio rerio)
COLGALT1,COLGALT2:Galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
3,4-Hyp 5-Gal-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 3x4Hyp-3Hyp-GalHyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
3,4-Hyp 5-Gal-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 3x4Hyp-3Hyp-GalHyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Collagen chain trimerization (Danio rerio)
Association of procollagen type XVIII (Danio rerio)
Alpha-1(XXVIII) chains [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 3x4Hyp-3Hyp-GalHyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
C-linked procollagen type XXVIII trimer [endoplasmic reticulum lumen] (Danio rerio)
Alpha-1(XXVIII) chains [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 3x4Hyp-3Hyp-GalHyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Galactosylation of collagen propeptide hydroxylysines by PLOD3 (Danio rerio)
PLOD3:Fe2+ dimer:Galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum membrane] (Danio rerio)
Galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
3,4-Hyp 5-Gal-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 3x4Hyp-3Hyp-GalHyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Galactosylation of collagen propeptide hydroxylysines by procollagen galactosyltransferases 1, 2. (Danio rerio)
COLGALT1,COLGALT2:Galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
3,4-Hyp 5-Gal-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 3x4Hyp-3Hyp-GalHyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Glucosylation of collagen propeptide hydroxylysines (Danio rerio)
PLOD3:Fe2+ dimer:Galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum membrane] (Danio rerio)
Galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
3,4-Hyp 5-Gal-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 3x4Hyp-3Hyp-GalHyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
PLOD3:Fe2+ dimer:Galactosyl-hydroxylysyl collagen propeptides dissociates (Danio rerio)
Galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
3,4-Hyp 5-Gal-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 3x4Hyp-3Hyp-GalHyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
PLOD3:Fe2+ dimer:Galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum membrane] (Danio rerio)
Galactosyl-hydroxylysyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
3,4-Hyp 5-Gal-Hyl collagen propeptides [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 3x4Hyp-3Hyp-GalHyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
Secretion of collagens (Danio rerio)
Collagens and tropocollagens:Serpin H1 [endoplasmic reticulum lumen] (Danio rerio)
Collagens and tropocollagens [endoplasmic reticulum lumen] (Danio rerio)
Non-fibrillar collagens [endoplasmic reticulum lumen] (Danio rerio)
C-linked procollagen type XXVIII trimer [endoplasmic reticulum lumen] (Danio rerio)
Alpha-1(XXVIII) chains [endoplasmic reticulum lumen] (Danio rerio)
Homologues of 3x4Hyp-3Hyp-GalHyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
col28a1d [endoplasmic reticulum lumen] (Danio rerio)
External Reference Information
External Reference
UniProt:A0A060Q6E4
Gene Names
col28a1d
Reference Genes
BioGPS Gene:100332225 col28a1d
CTD Gene:100332225 col28a1d
ENSEMBL:ENSDARG00000087087
KEGG Gene (Danio rerio):100332225 col28a1d
Monarch:100332225 col28a1d
NCBI Gene:100332225 col28a1d
Reference Transcript
RefSeq:NM_001302249.1 col28a1d
Participates
as a member of
Homologues of 3x4Hyp-3Hyp-GalHyl-COL28A1 [endoplasmic reticulum lumen] (Danio rerio)
Other forms of this molecule
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [extracellular region]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
col28a1d [endoplasmic reticulum lumen]
Inferred From
3x4Hyp-3Hyp-GalHyl-COL28A1 [endoplasmic reticulum lumen]
(Homo sapiens)
Modified Residues
Name
(2S,4R)-4-hydroxyproline at unknown position
PsiMod Name
(2S,4R)-4-hydroxyproline
PsiMod Definition
A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline
Name
(2S,4R)-4-hydroxyproline at unknown position
PsiMod Name
(2S,4R)-4-hydroxyproline
PsiMod Definition
A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline
Name
(2S,4R)-4-hydroxyproline at unknown position
PsiMod Name
(2S,4R)-4-hydroxyproline
PsiMod Definition
A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline
Name
(2S,3S)-3-hydroxyproline at unknown position
PsiMod Name
(2S,3S)-3-hydroxyproline
PsiMod Definition
A protein modification that effectively converts an L-proline residue to 3-hydroxy-L-proline.
Name
O5-galactosyl-L-hydroxylysine at unknown position
PsiMod Name
O5-galactosyl-L-hydroxylysine
PsiMod Definition
A protein modification that effectively converts an L-lysine residue to O5-galactosyl-L-hydroxylysine.
Cross References
RefSeq
NP_001289178.1
ZFIN
ZDB-GENE-160503-1
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