Reactome | col4a4 [extracellular region]

col4a4 [extracellular region]

Stable Identifier

R-DRE-2268910-3

Type

Protein [EntityWithAccessionedSequence]

Species

Danio rerio

Compartment

extracellular region

Synonyms

3x4Hyp-5Hyl-COL27A1(42-1860), X1WFR7

Locations in the PathwayBrowser

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Extracellular matrix organization (Danio rerio)

- Collagen formation (Danio rerio)
  - Collagen biosynthesis and modifying enzymes (Danio rerio)
    - Removal of fibrillar collagen N-propeptides (Danio rerio)
      - Fibrillar procollagens [extracellular region] (Danio rerio)
        
        Procollagen type XXVII [extracellular region] (Danio rerio)
        
        Alpha-1(XXVII) propeptides [extracellular region] (Danio rerio)
        
        Homologues of 3x4Hyp-5Hyl-COL27A1(42-1860) [extracellular region] (Danio rerio)
        
        col4a4 [extracellular region] (Danio rerio)
    - Secretion of collagens (Danio rerio)
      - Collagens and tropocollagens [extracellular region] (Danio rerio)
        
        Fibrillar procollagens [extracellular region] (Danio rerio)
        
        Procollagen type XXVII [extracellular region] (Danio rerio)
        
        Alpha-1(XXVII) propeptides [extracellular region] (Danio rerio)
        
        Homologues of 3x4Hyp-5Hyl-COL27A1(42-1860) [extracellular region] (Danio rerio)
        
        col4a4 [extracellular region] (Danio rerio)

External Reference Information

External Reference

UniProt:X1WFR7

Gene Names

col4a4

Reference Genes

BioGPS Gene:554270 col4a4

ENSEMBL:ENSDARG00000002831

KEGG Gene (Danio rerio):554270 col4a4

Monarch:554270 col4a4

NCBI Gene:554270 col4a4

Reference Transcript

RefSeq:XM_009291835.2 col4a4

Other Identifiers

13027452

13285012

554270

A_15_P165801

A_15_P288591

A_15_P336595

A_15_P567522

CUST_11724_PI428451958

CUST_9601_PI428451953

DRER08317

DRER52411

DRER56570

DRER59254

ENSDART00000058165

ENSDART00000058165_1

ENSDART00000058165_2

ENSDART00000079031

ENSDART00000099521

GO:0003674

GO:0005198

GO:0005201

GO:0005575

GO:0005581

GO:0032991

GT_Spec_XM_688862.6_119286

XM_682502

XM_688862

Participates

as a member of

Homologues of 3x4Hyp-5Hyl-COL27A1(42-1860) [extracellular region] (Danio rerio)

Other forms of this molecule

col4a4 [endoplasmic reticulum lumen]

col4a4 [extracellular region]

Inferred From

3x4Hyp-5Hyl-COL27A1(42-1860) [extracellular region] (Homo sapiens)

Modified Residues

Name

(2S,4R)-4-hydroxyproline at unknown position

PsiMod Name

(2S,4R)-4-hydroxyproline

PsiMod Definition

A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline

Name

(2S,4R)-4-hydroxyproline at unknown position

PsiMod Name

(2S,4R)-4-hydroxyproline

PsiMod Definition

A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline

Name

(2S,4R)-4-hydroxyproline at unknown position

PsiMod Name

(2S,4R)-4-hydroxyproline

PsiMod Definition

A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline

Name

(2S,5R)-5-hydroxylysine at unknown position

PsiMod Name

(2S,5R)-5-hydroxylysine

PsiMod Definition

A protein modification that effectively converts an L-lysine residue to 5-hydroxy-L-lysine.

Cross References

RefSeq

XP_009290110.1

ZFIN

ZDB-GENE-101001-1

Ensembl

ENSDARG00000002831, ENSDART00000154476, ENSDARP00000129072