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zgc:113935 [cytosol]
Stable Identifier
R-DRE-72367
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
cytosol
Synonyms
RPS29, Q6Q419
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Danio rerio)
Nonsense-Mediated Decay (NMD) (Danio rerio)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) (Danio rerio)
SMG1 phosphorylates UPF1 (enhanced by Exon Junction Complex) (Danio rerio)
SMG1:Phosphorylated UPF1:EJC:Translated mRNP [cytosol] (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
SMG1:UPF1:EJC:Translated mRNP [cytosol] (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
SMG6 hydrolyzes mRNA with premature termination codon (Danio rerio)
Phosphorylated UPF1:SMG5:SMG7:SMG6:PP2A:Translated mRNP [cytosol] (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
p-4S-UPF1 recruits SMG5, SMG7, SMG6, PNRC2, DCP1A, and PP2A (Danio rerio)
Phosphorylated UPF1:SMG5:SMG7:SMG6:PP2A:Translated mRNP [cytosol] (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
SMG1:Phosphorylated UPF1:EJC:Translated mRNP [cytosol] (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) (Danio rerio)
Formation of UPF1:eRF3 complex on mRNA with a premature termination codon and no Exon Junction Complex (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Not Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
UPF1:eRF3 Complex on Translated mRNA [cytosol] (Danio rerio)
Translated mRNA Complex with Premature Termination Codon Not Preceding Exon Junction [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
Metabolism of proteins (Danio rerio)
Translation (Danio rerio)
Eukaryotic Translation Initiation (Danio rerio)
Cap-dependent Translation Initiation (Danio rerio)
Formation of a pool of free 40S subunits (Danio rerio)
Release of 40S and 60S subunits from the 80S ribosome (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
eIF3 and eIF1A bind to the 40S subunit (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
40S:eIF3:eIF1A [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
Formation of the ternary complex, and subsequently, the 43S complex (Danio rerio)
Formation of the 43S pre-initiation complex (Danio rerio)
40S:eIF3:eIF1A [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
43S complex [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
Ribosomal scanning and start codon recognition (Danio rerio)
Ribosomal scanning (Danio rerio)
48S complex [cytosol] (Danio rerio)
43S complex [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
Start codon recognition (Danio rerio)
48S complex [cytosol] (Danio rerio)
43S complex [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
L13a-mediated translational silencing of Ceruloplasmin expression (Danio rerio)
Association of phospho-L13a with GAIT element of Ceruloplasmin mRNA (Danio rerio)
43S: Ceruloplasmin mRNA:eIF4F:eIF4B:eIF4H:PABP [cytosol] (Danio rerio)
43S complex [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
phospho-L13a associated wth the 3' UTR GAIT element of ceruloplasmin mRNA within the translation initiation complex [cytosol] (Danio rerio)
43S: Ceruloplasmin mRNA:eIF4F:eIF4B:eIF4H:PABP [cytosol] (Danio rerio)
43S complex [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
SRP-dependent cotranslational protein targeting to membrane (Danio rerio)
Nascent polypeptide:mRNA:ribosome complex binds signal recognition particle (SRP) (Danio rerio)
SRP:polypeptide+signal:ribosome [cytosol] (Danio rerio)
ribosome:mRNA:polypeptide+signal [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
ribosome:mRNA:polypeptide+signal [cytosol] (Danio rerio)
80S ribosome [cytosol] (Danio rerio)
40S ribosomal complex [cytosol] (Danio rerio)
zgc:113935 [cytosol] (Danio rerio)
External Reference Information
External Reference
UniProt:Q6Q419
Gene Names
zgc:113935
Reference Genes
BioGPS Gene:405889 zgc:113935
ENSEMBL:ENSDARG00000041232
ENSEMBL:ENSDARG00000041232.6 zgc:113935
KEGG Gene (Danio rerio):405889 zgc:113935
Monarch:405889 zgc:113935
NCBI Gene:405889 zgc:113935
Reference Transcript
RefSeq:NM_212953.1 zgc:113935
Other Identifiers
13099789
405889
A_15_P119925
BC091557
DRER08166
Dr.24815.2.S1_at
ENSDART00000060444
ENSDART00000060444_1
ENSDART00000060444_2
GO:0001525
GO:0001570
GO:0002376
GO:0003735
GO:0005198
GO:0005829
GO:0005840
GO:0006412
GO:0008270
GO:0012501
GO:0022627
GO:0023052
GO:0030154
GO:0030218
GO:0043009
GO:0043226
GO:0048821
GO:0048856
GO:0051726
GO:0060218
GO:0072332
GO:1990904
GT_Spec_NM_212953.1_189815
LOLS04542
MADDr01002664
NM_212953
ZV700S00004231
Participates
as a component of
40S ribosomal complex [cytosol] (Danio rerio)
Other forms of this molecule
zgc:113935 [nucleoplasm]
Inferred From
RPS29 [cytosol]
(Homo sapiens)
Cross References
RefSeq
NP_998118.1
ZFIN
ZDB-GENE-040622-5
Ensembl
ENSDARP00000060443
,
ENSDART00000060444
,
ENSDARG00000041232
PDB
7OYB
,
7OYA
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