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ISY1 [nucleoplasm]
Stable Identifier
R-GGA-6781963
Type
Protein [EntityWithAccessionedSequence]
Species
Gallus gallus
Compartment
nucleoplasm
Synonyms
ISY1, F1P220
Locations in the PathwayBrowser
Expand all
DNA Repair (Gallus gallus)
Nucleotide Excision Repair (Gallus gallus)
Transcription-Coupled Nucleotide Excision Repair (TC-NER) (Gallus gallus)
Dual incision in TC-NER (Gallus gallus)
5' incision of damaged DNA strand by ERCC1:ERCC4 in TC-NER (Gallus gallus)
TC-NER incision complex [nucleoplasm] (Gallus gallus)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Gallus gallus)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
DNA polymerases delta, epsilon or kappa bind the TC-NER site (Gallus gallus)
TC-NER incision complex: 5'-incised damaged DNA:trimmed nascent mRNA:(PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
TC-NER incision complex:5'-incised damaged DNA:trimmed nascent mRNA [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
ERCC2-facilitated RNA Pol II backtracking in TC-NER (Gallus gallus)
TC-NER pre-incision complex [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
ERCC3-facilitated RNA Pol II backtracking in TC-NER (Gallus gallus)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
TC-NER pre-incision complex:Partially open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
ERCC5 and RPA bind TC-NER site (Gallus gallus)
TC-NER pre-incision complex:Open bubble damaged DNA template:RPA:ERCC5:trimmed nascent mRNA [nucleoplasm] (Gallus gallus)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
TC-NER pre-incision complex:Open bubble damaged DNA template:trimmed nascent mRNA [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
Formation of TC-NER Pre-Incision Complex (Gallus gallus)
Assembly of the pre-incision complex in TC-NER (Gallus gallus)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
UVSSA:USP7 deubiquitinates ERCC6 (Gallus gallus)
TC-NER pre-incision complex [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
Ubiquitinated,hyperphosphorylated RNA Pol II:Damaged DNA template:nascent mRNA hybrid:TFIIH:Ub:ERCC6:ERCC8:DDB1:CUL4:RBX1:UVSSA:USP7:XAB2 complex:XPA:TCEA1:HMGN1:EP300 [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
Gap-filling DNA repair synthesis and ligation in TC-NER (Gallus gallus)
Ligation of newly synthesized repair patch to incised DNA in TC-NER (Gallus gallus)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
TC-NER post-incision complex:dsDNA with transcription bubble [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in TC-NER (Gallus gallus)
TC-NER post-incision complex:SSB-dsDNA:trimmed nascent mRNA: (PCNA:POLD,POLE), (MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
TC-NER post-incision complex:incised DNA without lesion:trimmed nascent mRNA:PCNA:(PCNA:POLD,POLE),(MonoUb:K164-PCNA:POLK):RPA:RFC [nucleoplasm] (Gallus gallus)
XAB2 complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
Metabolism of RNA (Gallus gallus)
Processing of Capped Intron-Containing Pre-mRNA (Gallus gallus)
mRNA Splicing (Gallus gallus)
mRNA Splicing - Major Pathway (Gallus gallus)
Formation of Exon Junction Complex (Gallus gallus)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
Formation of the active Spliceosomal C complex (Gallus gallus)
Spliceosomal Active C Complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
Spliceosomal Intermediate C Complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
Lariat Formation and 5'-Splice Site Cleavage (Gallus gallus)
Spliceosomal Active C Complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Gallus gallus)
ISY1 [nucleoplasm] (Gallus gallus)
External Reference Information
External Reference
UniProt:F1P220
Gene Names
ISY1
Reference Genes
BioGPS Gene:415968 ISY1
ENSEMBL:ENSGALG00000005012
KEGG Gene (Gallus gallus):415968 ISY1
Monarch:415968 ISY1
NCBI Gene:415968 ISY1
Reference Transcript
RefSeq:XM_414311.3 ISY1
Other Identifiers
415968
GO:0000350
GO:0006397
GO:0008150
GO:0022607
GO:0022618
GO:0034641
GO:0065003
GT_A_87_P017659
Gga.5565.1.S1_at
Participates
as a component of
XAB2 complex [nucleoplasm] (Gallus gallus)
Spliceosomal B Complex [nucleoplasm] (Gallus gallus)
Spliceosomal Intermediate C Complex [nucleoplasm] (Gallus gallus)
Spliceosomal Active C Complex [nucleoplasm] (Gallus gallus)
Spliceosomal active C complex with lariat containing, 5'-end cleaved pre-mRNP:CBC complex [nucleoplasm] (Gallus gallus)
pre-EJC:Spliceosomal C:pre-mRNP:CBC [nucleoplasm] (Gallus gallus)
Inferred From
ISY1 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
XP_414311.1
OpenTargets
ENSG00000240682
Ensembl
ENSGALP00000008013
,
ENSGALG00000005012
,
ENSGALT00000008027
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