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PATL1 [cytosol]
Stable Identifier
R-HSA-2028617
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
cytosol
Synonyms
Protein PAT1 homolog 1, PATL1_HUMAN
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Homo sapiens)
Deadenylation-dependent mRNA decay (Homo sapiens)
mRNA decay by 5' to 3' exoribonuclease (Homo sapiens)
5' to 3' exoribonuclease hydrolyzes decapped mRNA (Homo sapiens)
Decapped mRNA:LSM1-7 Complex [cytosol] (Homo sapiens)
Lsm1-7 Complex [cytosol] (Homo sapiens)
PATL1 [cytosol] (Homo sapiens)
Lsm1-7 Complex [cytosol] (Homo sapiens)
PATL1 [cytosol] (Homo sapiens)
DCP1-DCP2 complex decaps mRNA (Homo sapiens)
Deadenylated mRNA:Lsm1-7 Complex [cytosol] (Homo sapiens)
Lsm1-7 Complex [cytosol] (Homo sapiens)
PATL1 [cytosol] (Homo sapiens)
Decapped mRNA:LSM1-7 Complex [cytosol] (Homo sapiens)
Lsm1-7 Complex [cytosol] (Homo sapiens)
PATL1 [cytosol] (Homo sapiens)
Lsm1-7 Complex binds deadenylated mRNA (Homo sapiens)
Deadenylated mRNA:Lsm1-7 Complex [cytosol] (Homo sapiens)
Lsm1-7 Complex [cytosol] (Homo sapiens)
PATL1 [cytosol] (Homo sapiens)
Lsm1-7 Complex [cytosol] (Homo sapiens)
PATL1 [cytosol] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q86TB9 PATL1
Gene Names
PATL1, OK/KNS-cl.5
Chain
chain:1-770
Reference Genes
BioGPS Gene:219988 PATL1
COSMIC (genes):PATL1 PATL1
CTD Gene:219988 PATL1
dbSNP Gene:219988 PATL1
ENSEMBL:ENSG00000166889 PATL1
HGNC:26721 PATL1
KEGG:hsa:219988 PATL1
Monarch:219988 PATL1
NCBI Gene:219988 PATL1
OMIM:614660 PATL1
UCSC:Q86TB9 PATL1
Reference Transcript
RefSeq:NM_152716.2 PATL1
Other Identifiers
11717957_at
11717958_s_at
11748962_a_at
16738736
219988
225466_PM_at
225466_at
225468_PM_at
225468_at
235234_PM_at
235234_at
235235_PM_s_at
235235_s_at
3374747
3374748
3374749
3374750
3374751
3374752
3374754
3374755
3374756
3374757
3374760
3374762
3374763
3374765
3374766
3374767
3374768
3374769
3374770
3374772
3374778
3374779
3374780
3374781
3374783
3374784
3862316
3862330
58426_at
65615_at
7948399
A_23_P373079
GE533957
GO:0000290
GO:0000932
GO:0003723
GO:0005515
GO:0005634
GO:0005737
GO:0005829
GO:0008266
GO:0016071
GO:0016605
GO:0016607
GO:0030014
GO:0033962
GO:0034046
GO:0036464
GO:0043226
HMNXSV003055039
Hs.179703.3.A1_3p_at
Hs.179703.3.A2_3p_at
Hs.293816.1.S1_3p_a_at
ILMN_1680782
PH_hs_0018178
TC11001829.hg
Participates
as a component of
Lsm1-7 Complex [cytosol] (Homo sapiens)
Inferred To
Patr-1 [cytosol]
(Drosophila melanogaster)
patr-1 [cytosol]
(Caenorhabditis elegans)
PAT1 [cytosol]
(Saccharomyces cerevisiae)
Ghost homologue of PATL1 [cytosol]
(Plasmodium falciparum)
Ghost homologue of PATL1 [cytosol]
(Xenopus tropicalis)
patl1 [cytosol]
(Danio rerio)
Patl1 [cytosol]
(Mus musculus)
Patl1 [cytosol]
(Rattus norvegicus)
pdc2 [cytosol]
(Schizosaccharomyces pombe)
PATL1 [cytosol]
(Bos taurus)
PATL1 [cytosol]
(Canis familiaris)
PATL1 [cytosol]
(Dictyostelium discoideum)
PATL1 [cytosol]
(Gallus gallus)
PATL1 [cytosol]
(Sus scrofa)
Cross References
RefSeq
NP_689929.2
ENSEMBL
ENSP00000300146
,
ENST00000300146
OpenTargets
ENSG00000166889
HPA
ENSG00000166889-PATL1
PRO
Q86TB9
Pharos - Targets
Q86TB9
GlyGen
Q86TB9
PDB
2XER
,
2XES
,
2XEQ
Interactors (4)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q08379 GOLGA2
3
p-S37-GOLGA2 [Golgi membrane]
(R-HSA-2172179)
GOLGA2 [endoplasmic reticulum-Golgi intermediate compartment membrane]
(R-HSA-2167933)
GOLGA2 [Golgi membrane]
(R-HSA-6808764)
0.718
6
UniProt:Q9NPI6 DCP1A
1
DCP1A [cytosol]
(R-HSA-430043)
0.564
2
UniProt:P25788 PSMA3
2
PSMA3 [cytosol]
(R-HSA-68728)
PSMA3 [nucleoplasm]
(R-HSA-174323)
0.556
3
UniProt:Q8IZH2 XRN1
1
XRN1 [cytosol]
(R-HSA-429835)
0.462
4
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