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TRIM39 [cytosol]
Stable Identifier
R-HSA-5688971
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
cytosol
Synonyms
E3 ubiquitin-protein ligase TRIM39 ecNumber6.3.2.-/ecNumber, TRI39_HUMAN
Locations in the PathwayBrowser
Expand all
Immune System (Homo sapiens)
Adaptive Immune System (Homo sapiens)
Class I MHC mediated antigen processing & presentation (Homo sapiens)
Antigen processing: Ubiquitination & Proteasome degradation (Homo sapiens)
Interaction of E3 with substrate and E2-Ub complex (Homo sapiens)
Ag-substrate:E3:E2:Ub [cytosol] (Homo sapiens)
E3 ligases in proteasomal degradation [cytosol] (Homo sapiens)
TRIM39 [cytosol] (Homo sapiens)
E3 ligases in proteasomal degradation [cytosol] (Homo sapiens)
TRIM39 [cytosol] (Homo sapiens)
Polyubiquitination of substrate (Homo sapiens)
E3 ligases in proteasomal degradation [cytosol] (Homo sapiens)
TRIM39 [cytosol] (Homo sapiens)
E3:K48-polyubiquitinated substrate [cytosol] (Homo sapiens)
E3 ligases in proteasomal degradation [cytosol] (Homo sapiens)
TRIM39 [cytosol] (Homo sapiens)
E3:Ub:substrate [cytosol] (Homo sapiens)
E3 ligases in proteasomal degradation [cytosol] (Homo sapiens)
TRIM39 [cytosol] (Homo sapiens)
Release of E3 from polyubiquitinated substrate (Homo sapiens)
E3 ligases in proteasomal degradation [cytosol] (Homo sapiens)
TRIM39 [cytosol] (Homo sapiens)
E3:K48-polyubiquitinated substrate [cytosol] (Homo sapiens)
E3 ligases in proteasomal degradation [cytosol] (Homo sapiens)
TRIM39 [cytosol] (Homo sapiens)
Transfer of Ub from E2 to substrate and release of E2 (Homo sapiens)
Ag-substrate:E3:E2:Ub [cytosol] (Homo sapiens)
E3 ligases in proteasomal degradation [cytosol] (Homo sapiens)
TRIM39 [cytosol] (Homo sapiens)
E3 ligases in proteasomal degradation [cytosol] (Homo sapiens)
TRIM39 [cytosol] (Homo sapiens)
E3:Ub:substrate [cytosol] (Homo sapiens)
E3 ligases in proteasomal degradation [cytosol] (Homo sapiens)
TRIM39 [cytosol] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q9HCM9 TRIM39
Gene Names
TRIM39, RNF23, TFP
Chain
chain:1-518
Reference Genes
BioGPS Gene:56658 TRIM39
COSMIC (genes):TRIM39 TRIM39
CTD Gene:56658 TRIM39
dbSNP Gene:56658 TRIM39
ENSEMBL:ENSG00000204599 TRIM39
ENSEMBL_homo_sapiens_GENE:ENSG00000204599.16 TRIM39
ENSEMBL_homo_sapiens_GENE:ENSG00000206495.12 TRIM39
ENSEMBL_homo_sapiens_GENE:ENSG00000224994.10 TRIM39
ENSEMBL_homo_sapiens_GENE:ENSG00000226437.10 TRIM39
ENSEMBL_homo_sapiens_GENE:ENSG00000229929.10 TRIM39
ENSEMBL_homo_sapiens_GENE:ENSG00000230308.10 TRIM39
ENSEMBL_homo_sapiens_GENE:ENSG00000232839.10 TRIM39
HGNC:10065 TRIM39
KEGG Gene (Homo sapiens):56658 TRIM39
Monarch:56658 TRIM39
NCBI Gene:56658 TRIM39
OMIM:605700 TRIM39
UCSC:Q9HCM9 TRIM39
Reference Transcript
RefSeq:NM_021253.3 TRIM39
RefSeq:NM_172016.2 TRIM39
Other Identifiers
11740458_a_at
11740459_a_at
11743862_a_at
17026176
17030260
17032965
17037746
222732_PM_at
222732_at
2901506
2901507
2901508
2901509
2901510
2901511
2901512
2901514
2901515
2901517
2901519
2901520
2901522
2901524
2901525
2901529
2901530
2901531
46182_at
55951_at
56658
8117869
8177770
8179088
A_24_P89413
A_33_P3306217
GE82608
GE87381
GO:0000278
GO:0003824
GO:0005515
GO:0005634
GO:0005737
GO:0005739
GO:0005829
GO:0006915
GO:0007049
GO:0007095
GO:0008270
GO:0012501
GO:0016567
GO:0016740
GO:0023052
GO:0030163
GO:0032435
GO:0036211
GO:0042802
GO:0043124
GO:0043226
GO:0046872
GO:0050821
GO:0061630
GO:0140096
GO:1902806
GO:2000059
GO:2001235
HMNXSV003004659
Hs.61515.0.S2_3p_at
ILMN_1730497
ILMN_1736562
ILMN_2413517
PH_hs_0024948
TC06004068.hg
TC6_apd_hap1000119.hg
TC6_cox_hap2000239.hg
TC6_dbb_hap3000215.hg
TC6_mann_hap4000183.hg
TC6_qbl_hap6000217.hg
TC6_ssto_hap7000194.hg
Participates
as a candidate of
E3 ligases in proteasomal degradation [cytosol] (Homo sapiens)
Inferred To
LOC100485429 [cytosol]
(Xenopus tropicalis)
si:ch211-154o6.7 [cytosol]
(Danio rerio)
RPP21 [cytosol]
(Canis familiaris)
TRIM39 [cytosol]
(Bos taurus)
TRIM39 [cytosol]
(Caenorhabditis elegans)
TRIM39 [cytosol]
(Gallus gallus)
TRIM39 [cytosol]
(Mus musculus)
TRIM39 [cytosol]
(Rattus norvegicus)
TRIM39 [cytosol]
(Sus scrofa)
zgc:136894 [cytosol]
(Danio rerio)
Homologues of TRIM39 [cytosol]
(Danio rerio)
Cross References
RefSeq
NP_067076.2
,
NP_742013.1
OpenTargets
ENSG00000204599
IntEnz
2.3.2.27
GeneCards
Q9HCM9
HPA
ENSG00000204599-TRIM39
Ensembl
ENSP00000397043
,
ENST00000419790
,
ENST00000451715
,
ENSP00000373096
,
ENST00000548002
,
ENST00000449318
,
ENSP00000404904
,
ENSP00000387445
,
ENSP00000404340
,
ENST00000433900
,
ENST00000445206
,
ENSP00000396986
,
ENSP00000401071
,
ENST00000550282
,
ENSP00000389198
,
ENSP00000412743
,
ENST00000458607
,
ENST00000440117
,
ENSP00000392130
,
ENST00000452705
,
ENST00000383602
,
ENST00000383603
,
ENST00000451132
,
ENST00000424575
,
ENST00000413715
,
ENST00000414015
,
ENSP00000409902
,
ENSP00000449847
,
ENSP00000449272
,
ENST00000430502
,
ENSP00000365844
,
ENSP00000448572
,
ENST00000552520
,
ENST00000396548
,
ENSG00000232839
,
ENSP00000401184
,
ENST00000547030
,
ENST00000438076
,
ENSG00000226437
,
ENSP00000391917
,
ENSP00000379796
,
ENST00000549841
,
ENSP00000373097
,
ENSG00000206495
,
ENSP00000379797
,
ENST00000552337
,
ENSP00000373095
,
ENSP00000411582
,
ENSG00000230308
,
ENSG00000204599
,
ENST00000443109
,
ENSP00000411949
,
ENST00000376656
,
ENSP00000379800
,
ENST00000450778
,
ENSP00000415259
,
ENSP00000414525
,
ENSP00000398355
,
ENST00000396551
,
ENSP00000394353
,
ENSP00000398956
,
ENST00000383601
,
ENSP00000448462
,
ENSG00000224994
,
ENSP00000450288
,
ENSP00000365847
,
ENST00000431272
,
ENST00000376659
,
ENSP00000447835
,
ENST00000438859
,
ENST00000400644
,
ENSG00000229929
,
ENSP00000383486
,
ENST00000396547
,
ENST00000426469
,
ENSP00000389852
,
ENST00000446397
PRO
Q9HCM9
Pharos - Targets
Q9HCM9
PDB
2DID
,
2DIF
,
2ECJ
Interactors (6)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:P51668 UBE2D1
3
UBE2D1 [cytosol]
(R-HSA-174236)
UBE2D1 [nucleoplasm]
(R-HSA-174197)
Ub-C85-UBE2D1 [cytosol]
(R-HSA-8864160)
0.8
6
UniProt:P61077 UBE2D3
3
Ub-C85-UBE2D3 [cytosol]
(R-HSA-8864191)
UBE2D3 [cytosol]
(R-HSA-934630)
UBE2D3 [nucleoplasm]
(R-HSA-205341)
0.8
6
UniProt:P24863 CCNC
1
CCNC [nucleoplasm]
(R-HSA-212418)
0.666
4
UniProt:P19474 TRIM21
1
TRIM21 [cytosol]
(R-HSA-976051)
0.666
4
UniProt:Q04323 UBXN1
2
UBXN1 [cytosol]
(R-HSA-8850588)
UBXN1 [nucleoplasm]
(R-HSA-9707052)
0.556
3
UniProt:O60341 KDM1A
1
KDM1A [nucleoplasm]
(R-HSA-996769)
0.553
2
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