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LSM5 [nucleoplasm]
Stable Identifier
R-HSA-6806795
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
U6 snRNA-associated Sm-like protein LSm5, LSM5_HUMAN
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
mRNA Splicing (Homo sapiens)
mRNA Splicing - Major Pathway (Homo sapiens)
Formation of the Spliceosomal B complex (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)
U4 snRNP:U6 snRNP complex [nucleoplasm] (Homo sapiens)
U6 snRNP [nucleoplasm] (Homo sapiens)
LSM2-8 complex [nucleoplasm] (Homo sapiens)
LSM5 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Bact complex (Homo sapiens)
LSM2-8 complex [nucleoplasm] (Homo sapiens)
LSM5 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Pre-B complex (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)
U4 snRNP:U6 snRNP complex [nucleoplasm] (Homo sapiens)
U6 snRNP [nucleoplasm] (Homo sapiens)
LSM2-8 complex [nucleoplasm] (Homo sapiens)
LSM5 [nucleoplasm] (Homo sapiens)
U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)
U4 snRNP:U6 snRNP complex [nucleoplasm] (Homo sapiens)
U6 snRNP [nucleoplasm] (Homo sapiens)
LSM2-8 complex [nucleoplasm] (Homo sapiens)
LSM5 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q9Y4Y9 LSM5
Gene Names
LSM5
Chain
initiator methionine:, chain:2-91
Reference Genes
BioGPS Gene:23658 LSM5
COSMIC (genes):LSM5 LSM5
CTD Gene:23658 LSM5
dbSNP Gene:23658 LSM5
ENSEMBL:ENSG00000106355 LSM5
HGNC:17162 LSM5
KEGG:hsa:23658 LSM5
Monarch:23658 LSM5
NCBI Gene:23658 LSM5
OMIM:607285 LSM5
UCSC:Q9Y4Y9 LSM5
Reference Transcript
RefSeq:NM_001130710.1 LSM5
RefSeq:NM_001139499.1 LSM5
RefSeq:NM_012322.2 LSM5
Other Identifiers
11723957_x_at
11723958_s_at
17056461
202903_PM_at
202903_at
202904_PM_s_at
202904_s_at
211747_PM_s_at
211747_s_at
23658
3044755
3044756
3044757
3044758
3044759
3044760
3044761
3044762
3044765
3044766
3044767
3044768
3044769
3044770
3044772
3044773
3044775
34270_at
71949_at
8138912
A_23_P93750
GE80265
GE86658
GO:0000398
GO:0003723
GO:0005515
GO:0005634
GO:0005654
GO:0005681
GO:0005688
GO:0005737
GO:0005829
GO:0006397
GO:0006402
GO:0008380
GO:0009617
GO:0016071
GO:0043226
GO:0046540
GO:0046982
GO:0071005
GO:0120115
GO:1990726
HMNXSV003036215
Hs.227280.0.S2_3p_at
ILMN_1737947
ILMN_2116556
PH_hs_0025178
TC07002876.hg
g13543564_3p_s_at
g6912487_3p_a_at
Participates
as a component of
LSM2-8 complex [nucleoplasm] (Homo sapiens)
Other forms of this molecule
LSM5 [cytosol]
Inferred To
Ghost homologue of LSM5 [nucleoplasm]
(Xenopus tropicalis)
BcDNA:RE60135 [nucleoplasm]
(Drosophila melanogaster)
lsm-5 [nucleoplasm]
(Caenorhabditis elegans)
LSM5 [nucleoplasm]
(Bos taurus)
LSM5 [nucleoplasm]
(Canis familiaris)
LSM5 [nucleoplasm]
(Gallus gallus)
LSM5 [nucleoplasm]
(Plasmodium falciparum)
LSM5 [nucleoplasm]
(Sus scrofa)
lsm5 [nucleoplasm]
(Dictyostelium discoideum)
lsm5 [nucleoplasm]
(Schizosaccharomyces pombe)
Lsm5 [nucleoplasm]
(Mus musculus)
Lsm5 [nucleoplasm]
(Rattus norvegicus)
Cross References
RefSeq
NP_001132971.1
,
NP_001124182.1
,
NP_036454.1
OpenTargets
ENSG00000106355
ENSEMBL
ENST00000409782
,
ENSP00000386707
,
ENSP00000386363
,
ENSP00000386814
,
ENSP00000387126
,
ENST00000409292
,
ENSP00000387109
,
ENST00000409952
,
ENSP00000410758
,
ENST00000409909
,
ENST00000410044
,
ENST00000450169
HPA
ENSG00000106355-LSM5
PRO
Q9Y4Y9
Pharos - Targets
Q9Y4Y9
PDB
6AH0
,
6QX9
,
8QXD
,
5O9Z
,
6QW6
,
8H6L
,
8R0B
,
8H6J
,
8H6K
,
8QZS
,
7ABG
,
6AHD
,
8R09
,
8R0A
,
3JCR
,
8R08
,
8RM5
,
8QO9
,
8H6E
Interactors (3)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:P62306 SNRPF
2
SNRPF [cytosol]
(R-HSA-191852)
SNRPF [nucleoplasm]
(R-HSA-71907)
0.879
13
UniProt:P62304 SNRPE
2
SNRPE [cytosol]
(R-HSA-191782)
SNRPE [nucleoplasm]
(R-HSA-71905)
0.743
5
UniProt:Q9H4B4 PLK3
1
PLK3 [nucleoplasm]
(R-HSA-3222161)
0.556
3
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