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UBF-1 Binds rDNA Promoter
Stable Identifier
R-HSA-73718
Type
Reaction [binding]
Species
Homo sapiens
Compartment
nucleolus
ReviewStatus
5/5
Locations in the PathwayBrowser
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Gene expression (Transcription) (Homo sapiens)
RNA Polymerase I Transcription (Homo sapiens)
RNA Polymerase I Promoter Clearance (Homo sapiens)
RNA Polymerase I Promoter Opening (Homo sapiens)
UBF-1 Binds rDNA Promoter (Homo sapiens)
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Methylcytosine in the promoter of a rRNA gene binds MBD2 (and possibly other Methyl Domain Binding Proteins) and prevents the transcription factor UBF-1 from binding. In mouse, methylation of the cytosine 133 nucleotides upstream of the start of transcription is sufficient. In the human rRNA promoter methylation of cytosines 9, 102, and 347 nucleotides upstream inhibit transcription. UBF-1 binds directly to the CORE and UCE elements of the ribosomal DNA promoter. This binding is mediated by the HMG boxes (primarily HMG box1). Phosphorylation may play a role in the modulation of UBF's DNA binding activity, as well as in subsequent steps. UBF is thought to bind DNA in a conformation specific manner (as opposed to a sequence specific manner). The binding of UBF to the minor groove of DNA induces strong DNA bending.
Literature References
PubMed ID
Title
Journal
Year
2330041
Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins.
Bell, SP
,
Tjian, R
,
Jantzen, HM
Nature
1990
Participants
Input
rDNA Promoter [nucleoplasm]
UBTF [nucleoplasm]
(Homo sapiens)
Output
UBF-1:rDNA Promoter [nucleoplasm]
(Homo sapiens)
Participates
as an event of
RNA Polymerase I Promoter Opening (Homo sapiens)
This event is regulated
Negatively by
Regulator
Nucleosome [nucleoplasm]
(Homo sapiens)
Regulator
Chromatin (H3K9me2, 5mC):MBD2 [nucleoplasm]
(Homo sapiens)
Orthologous Events
UBF-1 Binds rDNA Promoter (Bos taurus)
UBF-1 Binds rDNA Promoter (Canis familiaris)
UBF-1 Binds rDNA Promoter (Danio rerio)
UBF-1 Binds rDNA Promoter (Gallus gallus)
UBF-1 Binds rDNA Promoter (Mus musculus)
UBF-1 Binds rDNA Promoter (Rattus norvegicus)
UBF-1 Binds rDNA Promoter (Sus scrofa)
UBF-1 Binds rDNA Promoter (Xenopus tropicalis)
Authored
Comai, L (2003-07-03)
Created
Comai, L (2003-07-03)
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