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SMNDC1 [nucleoplasm]
Stable Identifier
R-HSA-8865958
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
nucleoplasm
Synonyms
Survival of motor neuron-related-splicing factor 30, SPF30_HUMAN
Locations in the PathwayBrowser
Expand all
Metabolism of RNA (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
mRNA Splicing (Homo sapiens)
mRNA Splicing - Major Pathway (Homo sapiens)
Disassembly of the Intron Lariat Spliceosome (new) (Homo sapiens)
Intron Lariat Spliceosome (ILS) [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal A complex (Homo sapiens)
Spliceosomal A complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal B complex (Homo sapiens)
Spliceosomal B complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal B* complex (Homo sapiens)
Spliceosomal B* complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal Bact complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Bact complex (Homo sapiens)
Spliceosomal B complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal Bact complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal C* complex (Homo sapiens)
Spliceosomal C complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal C* complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal P complex and exon ligation (Homo sapiens)
Spliceosomal C* complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal P complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Formation of the Spliceosomal Pre-B complex (Homo sapiens)
Spliceosomal A complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal Pre-B complex [nucleoplasm] (Homo sapiens)
U2 snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal P complex dissociates yielding the intron-containing complex (ILS) and the spliced mRNP (new) (Homo sapiens)
Intron Lariat Spliceosome (ILS) [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
Spliceosomal P complex [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
SMNDC1 [nucleoplasm] (Homo sapiens)
External Reference Information
External Reference
UniProt:O75940 SMNDC1
Gene Names
SMNDC1, SMNR, SPF30
Chain
chain:1-238
Reference Genes
BioGPS Gene:10285 SMNDC1
COSMIC (genes):SMNDC1 SMNDC1
CTD Gene:10285 SMNDC1
dbSNP Gene:10285 SMNDC1
ENSEMBL:ENSG00000119953 SMNDC1
ENSEMBL_homo_sapiens_GENE:ENSG00000119953.14 SMNDC1
HGNC:16900 SMNDC1
KEGG Gene (Homo sapiens):10285 SMNDC1
Monarch:10285 SMNDC1
NCBI Gene:10285 SMNDC1
OMIM:603519 SMNDC1
UCSC:O75940 SMNDC1
Reference Transcript
RefSeq:NM_005871.3 SMNDC1
Other Identifiers
10285
11720839_a_at
11720840_a_at
11720841_s_at
16718370
18670754
18670755
18670756
18670757
18670758
18670760
18670762
18670763
200071_PM_at
200071_at
3306511
3306513
3306515
3306517
3306518
3306519
3306520
3306521
3306522
3306523
3306524
3306527
3306529
3306532
3306533
3306534
3306535
38040_at
42636_at
7892549
7893005
7893030
7893257
7893349
7893518
7894138
7895160
7895499
7895629
7936307
A_23_P127233
A_33_P3219429
GE481429
GE79093
GO:0000375
GO:0003723
GO:0005515
GO:0005634
GO:0005654
GO:0005681
GO:0005737
GO:0006397
GO:0006915
GO:0008380
GO:0012501
GO:0015030
GO:0016071
GO:0016607
GO:0043226
HMNXSV003000810
Hs.79968.0.S2_3p_at
ILMN_1691789
PH_hs_0004616
TC10001655.hg
Participates
as a component of
U2 snRNP [nucleoplasm] (Homo sapiens)
U2 12S snRNP [nucleoplasm] (Homo sapiens)
Inferred To
Ghost homologue of SMNDC1 [nucleoplasm]
(Caenorhabditis elegans)
smndc1 [nucleoplasm]
(Danio rerio)
smndc1 [nucleoplasm]
(Xenopus tropicalis)
SMNDC1 [nucleoplasm]
(Bos taurus)
SMNDC1 [nucleoplasm]
(Canis familiaris)
SMNDC1 [nucleoplasm]
(Dictyostelium discoideum)
SMNDC1 [nucleoplasm]
(Gallus gallus)
SMNDC1 [nucleoplasm]
(Plasmodium falciparum)
SMNDC1 [nucleoplasm]
(Sus scrofa)
Smndc1 [nucleoplasm]
(Mus musculus)
Smndc1 [nucleoplasm]
(Rattus norvegicus)
spf30 [nucleoplasm]
(Schizosaccharomyces pombe)
Spf30 [nucleoplasm]
(Drosophila melanogaster)
Cross References
RefSeq
NP_005862.1
OpenTargets
ENSG00000119953
GeneCards
O75940
HPA
ENSG00000119953-SMNDC1
Ensembl
ENST00000369603
,
ENSP00000358605
,
ENSP00000358616
,
ENSG00000119953
,
ENST00000369592
PRO
O75940
Pharos - Targets
O75940
PDB
4A4F
,
8POI
,
4A4H
Interactors (1)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:O75533 SF3B1
1
SF3B1 [nucleoplasm]
(R-HSA-71968)
0.669
4
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