Reactome | RBM42 [nucleoplasm]

RBM42 [nucleoplasm]

Stable Identifier

R-HSA-9769526

Type

Protein [EntityWithAccessionedSequence]

Species

Homo sapiens

Compartment

nucleoplasm

Synonyms

RNA-binding protein 42, RBM42_HUMAN

Locations in the PathwayBrowser for interactor UniProt:Q6ZRY4 RBPS2

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External Reference Information

External Reference

UniProt:Q9BTD8 RBM42

Gene Names

RBM42

Chain

initiator methionine:1, chain:2-480

Reference Genes

BioGPS Gene:79171 RBM42

COSMIC (genes):RBM42 RBM42

CTD Gene:79171 RBM42

dbSNP Gene:79171 RBM42

ENSEMBL:ENSG00000126254 RBM42

HGNC:28117 RBM42

KEGG:hsa:79171 RBM42

Monarch:79171 RBM42

NCBI Gene:79171 RBM42

OMIM:613232 RBM42

UCSC:Q9BTD8 RBM42

Reference Transcript

Other Identifiers

11736093_a_at

11748892_a_at

11761408_at

16861093

205740_PM_s_at

205740_s_at

34880_at

3830613

3830614

3830615

3830616

3830618

3830619

3830620

3830621

3830623

3830625

3830626

3830627

3830628

3830629

79171

8027908

AC002115_rna2_at

A_23_P90444

GE62176

GO:0000398

GO:0003676

GO:0003723

GO:0003729

GO:0005515

GO:0005634

GO:0005654

GO:0005681

GO:0005737

GO:0016071

GO:0046540

GO:0048025

HMNXSV003009752

ILMN_1670456

PH_hs_0000523

TC19000477.hg

TC19002104.hg

g13236562_3p_a_at

Participates

as an output of

Formation of the Spliceosomal B complex (Homo sapiens)

as a component of

U4:U5:U6 tri-snRNP complex [nucleoplasm] (Homo sapiens)

Inferred To

Ghost homologue of RBM42 [nucleoplasm] (Caenorhabditis elegans)

Ghost homologue of RBM42 [nucleoplasm] (Dictyostelium discoideum)

Ghost homologue of RBM42 [nucleoplasm] (Drosophila melanogaster)

Ghost homologue of RBM42 [nucleoplasm] (Saccharomyces cerevisiae)

rbm42 [nucleoplasm] (Danio rerio)

rbm42 [nucleoplasm] (Xenopus tropicalis)

RBM42 [nucleoplasm] (Bos taurus)

RBM42 [nucleoplasm] (Canis familiaris)

RBM42 [nucleoplasm] (Plasmodium falciparum)

RBM42 [nucleoplasm] (Schizosaccharomyces pombe)

RBM42 [nucleoplasm] (Sus scrofa)

Rbm42 [nucleoplasm] (Mus musculus)

Rbm42 [nucleoplasm] (Rattus norvegicus)

Cross References

RefSeq

NP_077297.2, NP_001306042.1

OpenTargets

ENSG00000126254

ENSEMBL

ENSP00000466044, ENST00000262633, ENSG00000126254, ENSP00000262633, ENST00000588161

HPA

ENSG00000126254-RBM42

GeneCards

RBM42

PRO

Q9BTD8

Pharos - Targets

Q9BTD8

GlyGen

Q9BTD8

PDB

6QX9, 8R0A, 8H6J, 6QW6, 8QPK, 8QXD, 8R08, 8H6E, 8QP8, 8QP9

Interactors (20)

Accession	#Entities	Entities	Confidence Score	Evidence (IntAct)
UniProt:P61978 HNRNPK	2	HNRNPK [nucleoplasm] (R-HSA-71945) polySUMO2-K422-HNRNPK [nucleoplasm] (R-HSA-4570532)	0.748	4
UniProt:P25788 PSMA3	2	PSMA3 [cytosol] (R-HSA-68728) PSMA3 [nucleoplasm] (R-HSA-174323)	0.666	4
UniProt:P39019 RPS19	2	RPS19 [cytosol] (R-HSA-72343) RPS19 [nucleoplasm] (R-HSA-6798710)	0.643	3
UniProt:Q15287 RNPS1	2	RNPS1 [nucleoplasm] (R-HSA-156778) RNPS1 [cytosol] (R-HSA-159256)	0.564	2
UniProt:Q6ZRY4 RBPS2			0.556	3
UniProt:P86480 PR20D			0.556	3
UniProt:P09012 SNRPA	1	SNRPA [nucleoplasm] (R-HSA-71915)	0.547	2
UniProt:P14678 SNRPB	4	2xMe-SNRPB [cytosol] (R-HSA-192218) SNRPB [cytosol] (R-HSA-191798) Me2-R108,R112-SNRPB [nucleoplasm] (R-HSA-192213) SNRPB [nucleoplasm] (R-HSA-71896)	0.527	2
UniProt:O43395 PRPF3	1	PRPF3 [nucleoplasm] (R-HSA-6806806)	0.527	2
UniProt:Q13601 KRR1	1	KRR1 [nucleoplasm] (R-HSA-6790611)	0.527	3
UniProt:O43172 PRPF4	1	PRPF4 [nucleoplasm] (R-HSA-71890)	0.527	2
UniProt:P15880 RPS2	3	RPS2 [cytosol] (R-HSA-72347) Me2aR-RPS2 [cytosol] (R-HSA-8879138) RPS2 [nucleoplasm] (R-HSA-6790655)	0.527	2
UniProt:Q8NC51 SERB1			0.527	2
UniProt:P46783 RPS10	3	RPS10 [cytosol] (R-HSA-72325) K63polyUb-K138,K139-RPS10 [cytosol] (R-HSA-9948298) RPS10 [nucleoplasm] (R-HSA-6798733)	0.527	2
UniProt:P23396 RPS3	2	RPS3 [cytosol] (R-HSA-72369) RPS3 [nucleoplasm] (R-HSA-6798714)	0.527	2
UniProt:O00425 IGF2BP3	1	IGF2BP3 [cytosol] (R-HSA-428313)	0.527	2
UniProt:P09651 HNRNPA1	2	HNRNPA1 [nucleoplasm] (R-HSA-71927) HNRNPA1 [cytosol] (R-HSA-9727902)	0.527	2
UniProt:O43290 SART1	1	SART1 [nucleoplasm] (R-HSA-4615999)	0.527	2
UniProt:Q9H9Z2 LIN28A	1	LIN28A [cytosol] (R-HSA-500391)	0.527	2
UniProt:P06748 NPM1	11	NPM1 [cytosol] (R-HSA-3008211) p-S4-NPM1 [cytosol] (R-HSA-6801679) NPM1 [nucleoplasm] (R-HSA-606320) NPM1 [granular component] (R-HSA-9017702) NPM1(1-117)-ALK(1058-1620) fusion [cytosol] (R-HSA-9699834) NPM1(1-117)-p-7Y-ALK(1058-1620) fusion [cytosol] (R-HSA-9699861) NPM1(1-117)-ALK(1068-1620) fusion [cytosol] (R-HSA-9730697) NPM1(1-117)-p-7Y-ALK(1068-1620) fusion [cytosol] (R-HSA-9730703) NPM1(1-117)-p-7Y-ALK(1058-1620) fusion [nucleoplasm] (R-HSA-9725010) polySUMO2,3-K263-NPM1 [nucleoplasm] (R-HSA-4086056) monoSUMO1-K263-NPM1 [nucleoplasm] (R-HSA-4086039)	0.483	2

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