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CDK9 [nucleoplasm]
Stable Identifier
R-MMU-51801
Type
Protein [EntityWithAccessionedSequence]
Species
Mus musculus
Compartment
nucleoplasm
Synonyms
Q99J95
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Mus musculus)
RNA Polymerase II Transcription (Mus musculus)
Generic Transcription Pathway (Mus musculus)
Transcriptional Regulation by TP53 (Mus musculus)
TP53 Regulates Transcription of DNA Repair Genes (Mus musculus)
CCNK:CDK12 binds RNA Pol II at DNA repair genes (Mus musculus)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Mus musculus)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Mus musculus)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Mus musculus)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
CDK12 phosphorylates RNA Pol II CTD at DNA repair genes (Mus musculus)
CCNK:CDK12:CDK12-Phosphorylated Elongation Complex at DNA repair genes [nucleoplasm] (Mus musculus)
CDK12-Phosphorylated Elongation Complex [nucleoplasm] (Mus musculus)
CDK12-phosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
CCNK:CDK12:Elongation Complex at DNA Repair Genes [nucleoplasm] (Mus musculus)
Elongation Complex at DNA Repair Genes [nucleoplasm] (Mus musculus)
Hyperphosphorylated RNA Pol II at DNA repair genes [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer (Mus musculus)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription (Mus musculus)
Phosphorylation of SMAD2 and SMAD3 linker regions by CDK8 or CDK9 (Mus musculus)
CDK8:CCNC/ CDK9:CCNT [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
RNA Polymerase II Pre-transcription Events (Mus musculus)
2-4 nt.backtracking of Pol II complex on the template leading to elongation pausing (Mus musculus)
Paused processive elongation complex [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Processive elongation complex [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
7-14 nt. Backtracking of Pol II complex on the template leading to elongation arrest (Mus musculus)
Processive elongation complex [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Abortive termination of elongation after arrest (Mus musculus)
Aborted elongation complex after arrest [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Processive elongation complex [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Elongating transcript encounters a lesion in the template (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Processive elongation complex [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Formation of P-TEFb complex (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Resumption of elongation after recovery from pausing (Mus musculus)
Paused processive elongation complex [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Processive elongation complex [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
TFIIS-mediated recovery of elongation from arrest (Mus musculus)
Processive elongation complex [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
RNA Polymerase II Transcription Elongation (Mus musculus)
Addition of nucleotides leads to transcript elongation (Mus musculus)
Elongation complex [nucleoplasm] (Mus musculus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Processive elongation complex [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Formation of RNA Pol II elongation complex (Mus musculus)
Hyperphosphorylation (Ser2) of RNA Pol II CTD by P-TEFb complex (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Recruitment of elongation factors to form elongation complex (Mus musculus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Elongation complex [nucleoplasm] (Mus musculus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Pol II elongation complex moves on the template as transcript elongates (Mus musculus)
Elongation complex prior to separation [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Processive elongation complex [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Separation of elongating transcript from template (Mus musculus)
Elongation complex prior to separation [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Elongation complex with separated and uncleaved transcript [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
RNA polymerase II transcribes snRNA genes (Mus musculus)
CBCAP complex binds 7-methylguanosine cap of snRNA (Mus musculus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
CDK7 phosphorylates serine-5 and serine-7 of heptad repeats in C-terminal domain of RNA polymerase II at snRNA promoter (Mus musculus)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Mus musculus)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
General transcription factors bind SNAPc:POU2F1:ZNF143:snRNA gene (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Integrator complex processes the 3' end of snRNA (Mus musculus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:CBCAP:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:Initiation factors:snRNA gene [nucleoplasm] (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Pre-snRNA is elongated and capped with 7-methylguanosine (Mus musculus)
RNA polymerase II (phosphoserine-2,7):RPAP2:Integrator:LEC:capped pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Pre-snRNA transcript initiation, Integrator binding, LEC binding (Mus musculus)
RNA polymerase II (phosphoserine-5,7):RPRD1A,B:RPRD2:RPAP2:Integrator:LEC:pre-snRNA:Initiation factors:snRNA gene [nucleoplasm] (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
RPAP2:RPRD1A,B:RPRD2:RNA polymerase II (phosphoserine-5,7):Initiation factors:snRNA gene [nucleoplasm] (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
RNA polymerase II binds initiation factors at promoter of snRNA gene (U1, U2, U4, U4atac, U5, U11, U12) (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
RNA polymerase II (unphosphorylated):Initiation factors at promoter of snRNA gene [nucleoplasm] (Mus musculus)
RNA polymerase II (unphosphorylated):Initiation factors [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
RPAP2 binds RNA polymerase II phosphorylated at serine-7 residues of heptad repeats in the C-terminal domain (Mus musculus)
RNA polymerase II (phosphoserine-5,7):Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
RPAP2:RPRD1A,B:RPRD2:RNA polymerase II (phosphoserine-5,7):Initiation factors:snRNA gene [nucleoplasm] (Mus musculus)
Initiation factors:CDK7:snRNA gene [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Signal Transduction (Mus musculus)
Signaling by Nuclear Receptors (Mus musculus)
ESR-mediated signaling (Mus musculus)
Estrogen-dependent gene expression (Mus musculus)
ESR1:ESTG:P-TEFb recruited to paused RNA polymerase II on MYB gene (Mus musculus)
ESR1:ESTG:P-TEFb [nucleoplasm] (Mus musculus)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
MYB gene:hypophosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Mus musculus)
ESR1:ESTG:P-TEFb [nucleoplasm] (Mus musculus)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
p-TEFb phosphorylates serine 2 in RNA polymerase II CTD (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
MYB gene:hyperphosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Mus musculus)
ESR1:ESTG:P-TEFb [nucleoplasm] (Mus musculus)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
MYB gene:hypophosphorylated RNA polymerase II:TFIIF:ESR1:ESTG:P-TEFb [nucleoplasm] (Mus musculus)
ESR1:ESTG:P-TEFb [nucleoplasm] (Mus musculus)
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
Signaling by TGFB family members (Mus musculus)
Signaling by TGF-beta Receptor Complex (Mus musculus)
Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer (Mus musculus)
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription (Mus musculus)
Phosphorylation of SMAD2 and SMAD3 linker regions by CDK8 or CDK9 (Mus musculus)
CDK8:CCNC/ CDK9:CCNT [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
CDK9 [nucleoplasm] (Mus musculus)
External Reference Information
External Reference
UniProt:Q99J95
Reference Genes
BioGPS Gene:107951
ENSEMBL:ENSMUSG00000009555
ENSEMBL:ENSMUSG00000009555.17
KEGG Gene (Mus musculus):107951
Monarch:107951
NCBI Gene:107951
UCSC:Q99J95
Reference Transcript
RefSeq:NM_130860.3
RefSeq:XM_011239001.1
Other Identifiers
10481670
107951
1417269_at
17383965
4316213
4550266
4667227
4696536
4744906
5040549
5136898
5209563
5391800
5546242
95037_at
A_51_P190667
A_55_P2072228
A_55_P2168587
GE126545
GO:0000166
GO:0000976
GO:0000978
GO:0001223
GO:0003012
GO:0003677
GO:0003682
GO:0003723
GO:0003824
GO:0004672
GO:0004674
GO:0004693
GO:0005515
GO:0005524
GO:0005634
GO:0005654
GO:0005737
GO:0006260
GO:0006281
GO:0006282
GO:0006325
GO:0006351
GO:0006355
GO:0006366
GO:0006468
GO:0006974
GO:0008023
GO:0008024
GO:0008353
GO:0010613
GO:0016071
GO:0016301
GO:0016310
GO:0016605
GO:0016740
GO:0017069
GO:0019901
GO:0030154
GO:0031297
GO:0031440
GO:0032968
GO:0036211
GO:0036464
GO:0043226
GO:0043923
GO:0045944
GO:0048856
GO:0051147
GO:0051647
GO:0051726
GO:0070691
GO:0071345
GO:0097322
GO:0106310
GO:0120186
GO:0120187
GO:0140096
GO:0140673
ILMN_2683933
aa212865_at
mMC008794
Participates
as an input of
Formation of P-TEFb complex (Mus musculus)
as a component of
P-TEFb(Cyclin T1:Cdk9) complex [nucleoplasm] (Mus musculus)
P-TEFb complex [nucleoplasm] (Mus musculus)
Inferred From
CDK9 [nucleoplasm]
(Homo sapiens)
Cross References
RefSeq
XP_011237303.1
,
NP_570930.1
IntEnz
2.7.11.23
Ensembl
ENSMUST00000009699
,
ENSMUST00000120105
,
ENSMUSP00000009699
,
ENSMUSG00000009555
,
ENSMUSP00000113327
PRO
Q99J95
MGI
1328368
Interactors (5)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q62093
2
Srsf2 [nucleoplasm]
(R-MMU-9770135-2)
Srsf2 [nucleoplasm]
(R-MMU-72033)
0.623
3
UniProt:Q91Y44 BRDT
0.623
3
UniProt:P08775 Polr2a
8
RNA polymerase II subunit RPB1 [nucleoplasm]
(R-MMU-216414)
phospho-p-S2,S7(CTD)-POLR2A [nucleoplasm]
(R-MMU-6814543)
phospho-p-S2,S5(CTD)-POLR2A [nucleoplasm]
(R-MMU-113420)
phospho-p-3S-POLR2A [nucleoplasm]
(R-MMU-6797701)
phospho-Ub,p-S2,S5(CTD)-POLR2A [nucleoplasm]
(R-MMU-6781855)
POLR2A [nucleoplasm]
(R-MMU-63502)
phospho-p-S5(CTD)-POLR2A [nucleoplasm]
(R-MMU-77100)
phospho-p-S5,S7(CTD)-POLR2A [nucleoplasm]
(R-MMU-6810226)
0.527
2
UniProt:Q9QWV9
1
Ccnt1 [nucleoplasm]
(R-MMU-51611)
0.527
4
UniProt:Q8R409 HEXI1
0.527
2
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