Reactome | Sdc2 [Golgi lumen]

Sdc2 [Golgi lumen]

Stable Identifier

R-RNO-2076356

Type

Protein [EntityWithAccessionedSequence]

Species

Rattus norvegicus

Compartment

Golgi lumen

Synonyms

HS(4)-SDC2, P34900

Locations in the PathwayBrowser

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External Reference Information

External Reference

UniProt:P34900 Sdc2

Gene Names

Sdc2, Hspg1, Synd2

Chain

signal peptide:1-18, chain:19-201

Reference Genes

BioGPS Gene:25615 Sdc2

KEGG:rno:25615 Sdc2

Monarch:25615 Sdc2

NCBI Gene:25615 Sdc2

UCSC:P34900 Sdc2

Reference Transcript

RefSeq:NM_013082.3 Sdc2

Participates

as a member of

HS(4)-PGs [Golgi lumen] (Rattus norvegicus)

Other forms of this molecule

Sdc2 [plasma membrane]

Sdc2 [endoplasmic reticulum lumen]

phospho-Sdc2 [endoplasmic reticulum lumen]

Sdc2 [Golgi lumen]

Sdc2 [lysosomal lumen]

Sdc2 [Golgi lumen]

phospho-Sdc2 [plasma membrane]

Syndecan-2 [plasma membrane]

Inferred From

HS(4)-SDC2 [Golgi lumen] (Homo sapiens)

Modified Residues

Name

O-xylosyl-L-serine (ChEBI:63657) at unknown position

Modification

beta-D-GlcA-(1->4)-alpha-D-GlcNS-(1->4)-beta-D-IdoA2S-(1->4)-alpha-D-GlcNS3S-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl-yl group

PsiMod Name

O-xylosyl-L-serine

PsiMod Definition

A protein modification that effectively converts an L-serine residue to O3-xylosylserine.

Cross References

RefSeq

NP_037214.1

PRO

P34900

RGD

3649

GlyGen

P34900

Interactors (20)

Accession	#Entities	Entities	Confidence Score	Evidence (IntAct)
UniProt:P34900 Sdc2	20	Sdc2 [plasma membrane] (R-RNO-2076683) Sdc2 [plasma membrane] (R-RNO-2076661) Sdc2 [plasma membrane] (R-RNO-2076644) Sdc2 [plasma membrane] (R-RNO-2076643) Sdc2 [plasma membrane] (R-RNO-2076631) Sdc2 [plasma membrane] (R-RNO-2076665) Sdc2 [endoplasmic reticulum lumen] (R-RNO-8956741) phospho-Sdc2 [endoplasmic reticulum lumen] (R-RNO-8956945) Sdc2 [Golgi lumen] (R-RNO-2064132) Sdc2 [Golgi lumen] (R-RNO-2063988) Sdc2 [Golgi lumen] (R-RNO-2064109) Sdc2 [Golgi lumen] (R-RNO-2054101) Sdc2 [Golgi lumen] (R-RNO-2063997) Sdc2 [Golgi lumen] (R-RNO-2076320) Sdc2 [Golgi lumen] (R-RNO-2076588) Sdc2 [Golgi lumen] (R-RNO-2076356) Sdc2 [Golgi lumen] (R-RNO-2076443) Sdc2 [Golgi lumen] (R-RNO-2076603) Sdc2 [Golgi lumen] (R-RNO-2076607) Sdc2 [Golgi lumen] (R-RNO-2076576)	0.667	4
UniProt:P34901 Sdc4	20	Sdc4 [plasma membrane] (R-RNO-2076670) Sdc4 [plasma membrane] (R-RNO-2076633) Sdc4 [plasma membrane] (R-RNO-2076694) Sdc4 [plasma membrane] (R-RNO-2076653) Sdc4 [plasma membrane] (R-RNO-2076674) Sdc4 [plasma membrane] (R-RNO-2076635) Sdc4 [Golgi lumen] (R-RNO-2064249) Sdc4 [Golgi lumen] (R-RNO-2064100) Sdc4 [Golgi lumen] (R-RNO-2064195) Sdc4 [Golgi lumen] (R-RNO-2054111) Sdc4 [Golgi lumen] (R-RNO-2064067) Sdc4 [Golgi lumen] (R-RNO-2076510) Sdc4 [Golgi lumen] (R-RNO-2076330) Sdc4 [Golgi lumen] (R-RNO-2076407) Sdc4 [Golgi lumen] (R-RNO-2076418) Sdc4 [Golgi lumen] (R-RNO-2076411) Sdc4 [Golgi lumen] (R-RNO-2076434) Sdc4 [Golgi lumen] (R-RNO-2076613) Sdc4 [Golgi lumen] (R-RNO-2076460) Sdc4 [Golgi lumen] (R-RNO-2076446)	0.602	4
UniProt:P33671	20	Sdc3 [plasma membrane] (R-RNO-2076685) Sdc3 [plasma membrane] (R-RNO-2076640) Sdc3 [plasma membrane] (R-RNO-2076692) Sdc3 [plasma membrane] (R-RNO-2076671) Sdc3 [plasma membrane] (R-RNO-2076657) Sdc3 [plasma membrane] (R-RNO-2076625) Sdc3 [Golgi lumen] (R-RNO-2063983) Sdc3 [Golgi lumen] (R-RNO-2064042) Sdc3 [Golgi lumen] (R-RNO-2064072) Sdc3 [Golgi lumen] (R-RNO-2054110) Sdc3 [Golgi lumen] (R-RNO-2064123) Sdc3 [Golgi lumen] (R-RNO-2076492) Sdc3 [Golgi lumen] (R-RNO-2076604) Sdc3 [Golgi lumen] (R-RNO-2076473) Sdc3 [Golgi lumen] (R-RNO-2076338) Sdc3 [Golgi lumen] (R-RNO-2076365) Sdc3 [Golgi lumen] (R-RNO-2076388) Sdc3 [Golgi lumen] (R-RNO-2076427) Sdc3 [Golgi lumen] (R-RNO-2076389) Sdc3 [Golgi lumen] (R-RNO-2076487)	0.59	2
UniProt:Q66HL2 SRC8			0.524	2
UniProt:A0A8I5ZXA1 A0A8I5ZXA1			0.524	2
UniProt:Q03555	1	Gphn [plasma membrane] (R-RNO-947505)	0.524	2
UniProt:P63074	1	Eif4e [cytosol] (R-RNO-72578)	0.524	2
UniProt:B1PRL5 CAVN4			0.524	2
UniProt:Q2PS20 JPH2			0.524	2
UniProt:Q66H98 CAVN2			0.524	2
UniProt:P55043 RAD			0.524	2
UniProt:B0BN18 PFD2			0.524	2
UniProt:Q8CFN2 Cdc42	3	Cdc42 [endoplasmic reticulum membrane] (R-RNO-5672086) Cdc42 [cytosol] (R-RNO-428464) Cdc42 [plasma membrane] (R-RNO-449545)	0.524	2
UniProt:P62198	2	Psmc5 [nucleoplasm] (R-RNO-174312) Psmc5 [cytosol] (R-RNO-68780)	0.524	2
UniProt:A0A8I5ZR44	2	SNRPD2 [nucleoplasm] (R-RNO-71901) SNRPD2 [cytosol] (R-RNO-191810)	0.524	2
UniProt:Q9JI92	3	Sdcbp [extracellular region] (R-RNO-6806206) Sdcbp [azurophil granule lumen] (R-RNO-6799372) Sdcbp [cytosol] (R-RNO-373639)	0.524	2
UniProt:Q9QUL6	1	Nsf [cytosol] (R-RNO-264471)	0.524	2
UniProt:A0A0G2K2P5	3	Tjp1 [plasma membrane] (R-RNO-3209844) Tjp1 [plasma membrane] (R-RNO-3209845) Tjp1 [cytosol] (R-RNO-532659)	0.524	2
UniProt:F1LMZ8	5	Psmd11 [ficolin-1-rich granule lumen] (R-RNO-6800436) Psmd11 [extracellular region] (R-RNO-6806441) Psmd11 [secretory granule lumen] (R-RNO-6800943) Psmd11 [nucleoplasm] (R-RNO-174327) Psmd11 [cytosol] (R-RNO-68790)	0.524	2
UniProt:P85125	2	Cavin1 [plasma membrane] (R-RNO-9714278) Cavin1 [nucleoplasm] (R-RNO-74981)	0.524	2

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