Reactome | Sdc4 [Golgi lumen]

Sdc4 [Golgi lumen]

Stable Identifier

R-RNO-2076394

Type

Protein [EntityWithAccessionedSequence]

Species

Rattus norvegicus

Compartment

Golgi lumen

Synonyms

Heparan(1)-SDC4, P34901

Locations in the PathwayBrowser

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External Reference Information

External Reference

UniProt:P34901 Sdc4

Gene Names

Sdc4, Synd4

Chain

signal peptide:1-23, chain:24-202

Reference Genes

BioGPS Gene:24771 Sdc4

KEGG:rno:24771 Sdc4

Monarch:24771 Sdc4

NCBI Gene:24771 Sdc4

UCSC:P34901 Sdc4

Reference Transcript

RefSeq:NM_012649.4 Sdc4

Other Identifiers

10851599

1367721_at

17779204

24771

5811348

5847165

6331378

6357587

6550777

6614448

6625543

A_42_P687186

A_64_P090747

GE1192382

GO:0001843

GO:0009986

GO:0010762

GO:0016020

GO:0042060

GO:0042130

GO:0042802

GO:0060122

GO:0070053

GO:1903543

GO:1903553

ILMN_1352387

PH_rn_0014815

S61868_at

S61868_g_at

Participates

as a member of

Heparan(1)-PGs [Golgi lumen] (Rattus norvegicus)

Other forms of this molecule

Sdc4 [plasma membrane]

Sdc4 [Golgi lumen]

Sdc4 [lysosomal lumen]

Sdc4 [Golgi lumen]

Sdc4 [plasma membrane]

Inferred From

Heparan(1)-SDC4 [Golgi lumen] (Homo sapiens)

Modified Residues

Name

O-xylosyl-L-serine (ChEBI:63646) at unknown position

Modification

beta-D-GlcA-(1->4)-alpha-D-GlcNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl-yl group

PsiMod Name

O-xylosyl-L-serine

PsiMod Definition

A protein modification that effectively converts an L-serine residue to O3-xylosylserine.

Cross References

RefSeq

NP_036781.1

ENSEMBL

ENSRNOP00000019386, ENSRNOG00000014297, ENSRNOT00000019386

PRO

P34901

GlyGen

P34901

RGD

3650

PDB

5G1D, 5A2P

Interactors (20)

Accession	#Entities	Entities	Confidence Score	Evidence (IntAct)
UniProt:P34900 Sdc2	20	Sdc2 [plasma membrane] (R-RNO-2076683) Sdc2 [plasma membrane] (R-RNO-2076661) Sdc2 [plasma membrane] (R-RNO-2076644) Sdc2 [plasma membrane] (R-RNO-2076643) Sdc2 [plasma membrane] (R-RNO-2076631) Sdc2 [plasma membrane] (R-RNO-2076665) Sdc2 [endoplasmic reticulum lumen] (R-RNO-8956741) phospho-Sdc2 [endoplasmic reticulum lumen] (R-RNO-8956945) Sdc2 [Golgi lumen] (R-RNO-2064132) Sdc2 [Golgi lumen] (R-RNO-2063988) Sdc2 [Golgi lumen] (R-RNO-2064109) Sdc2 [Golgi lumen] (R-RNO-2054101) Sdc2 [Golgi lumen] (R-RNO-2063997) Sdc2 [Golgi lumen] (R-RNO-2076320) Sdc2 [Golgi lumen] (R-RNO-2076588) Sdc2 [Golgi lumen] (R-RNO-2076356) Sdc2 [Golgi lumen] (R-RNO-2076443) Sdc2 [Golgi lumen] (R-RNO-2076603) Sdc2 [Golgi lumen] (R-RNO-2076607) Sdc2 [Golgi lumen] (R-RNO-2076576)	0.602	4
UniProt:P34901 Sdc4	20	Sdc4 [plasma membrane] (R-RNO-2076670) Sdc4 [plasma membrane] (R-RNO-2076633) Sdc4 [plasma membrane] (R-RNO-2076694) Sdc4 [plasma membrane] (R-RNO-2076653) Sdc4 [plasma membrane] (R-RNO-2076674) Sdc4 [plasma membrane] (R-RNO-2076635) Sdc4 [Golgi lumen] (R-RNO-2064249) Sdc4 [Golgi lumen] (R-RNO-2064100) Sdc4 [Golgi lumen] (R-RNO-2064195) Sdc4 [Golgi lumen] (R-RNO-2054111) Sdc4 [Golgi lumen] (R-RNO-2064067) Sdc4 [Golgi lumen] (R-RNO-2076510) Sdc4 [Golgi lumen] (R-RNO-2076330) Sdc4 [Golgi lumen] (R-RNO-2076407) Sdc4 [Golgi lumen] (R-RNO-2076418) Sdc4 [Golgi lumen] (R-RNO-2076411) Sdc4 [Golgi lumen] (R-RNO-2076434) Sdc4 [Golgi lumen] (R-RNO-2076613) Sdc4 [Golgi lumen] (R-RNO-2076460) Sdc4 [Golgi lumen] (R-RNO-2076446)	0.592	3
UniProt:P04041	2	Gpx1 [cytosol] (R-RNO-71673) Gpx1 [mitochondrial matrix] (R-RNO-3322994)	0.524	2
UniProt:A0A8I5Y6N4 A0A8I5Y6N4			0.524	2
UniProt:P68101	2	phospho-Eif2s1 [cytosol] (R-RNO-381060) Eif2s1 [cytosol] (R-RNO-72510)	0.524	2
UniProt:A0A8I6ALD4	4	Tjp2 [nucleoplasm] (R-RNO-2064410) Tjp2 [cytosol] (R-RNO-2064412) Tjp2 [plasma membrane] (R-RNO-351897) Tjp2 [plasma membrane] (R-RNO-351862)	0.524	2
UniProt:Q5RKG9 Q5RKG9			0.524	2
UniProt:A0A8L2QHS0 A0A8L2QHS0			0.524	2
UniProt:P50463 CSRP3			0.524	2
UniProt:Q68FQ0	1	Cct5 [cytosol] (R-RNO-390447)	0.524	2
UniProt:D4A415	1	Abraxas2 [cytosol] (R-RNO-5691428)	0.524	2
UniProt:P47858	1	Pfkm [cytosol] (R-RNO-70460)	0.524	2
UniProt:Q4QQU7 GRTP1			0.524	2
UniProt:Q5U2Y3	1	Mpp7 [plasma membrane] (R-RNO-9714466)	0.524	2
UniProt:Q9Z1W6 LYRIC			0.524	2
UniProt:Q641Z4	1	Cdk9 [nucleoplasm] (R-RNO-51801)	0.524	2
UniProt:P85125	2	Cavin1 [plasma membrane] (R-RNO-9714278) Cavin1 [nucleoplasm] (R-RNO-74981)	0.524	2
UniProt:P04937	8	Fn1 [extracellular region] (R-RNO-3787935) Fn1 [extracellular region] (R-RNO-3788024) Fn1 [extracellular region] (R-RNO-2533850) Fn1 [extracellular region] (R-RNO-2533841) phospho-Fn1 [endoplasmic reticulum lumen] (R-RNO-8956937) Fn1 [endoplasmic reticulum lumen] (R-RNO-8956708) Fn1 [platelet alpha granule lumen] (R-RNO-114620) Fn1 [extracellular region] (R-RNO-54851)	0.524	2
UniProt:P05696	7	Prkca [nucleoplasm] (R-RNO-450530) phospho-Prkca [nucleoplasm] (R-RNO-5223292) Prkca [plasma membrane] (R-RNO-156469) phospho-Prkca [plasma membrane] (R-RNO-4332340) phospho-Prkca [cytosol] (R-RNO-5218731) phospho-Prkca [cytosol] (R-RNO-4332337) Prkca [cytosol] (R-RNO-58196)	0.499	3
UniProt:P17252 PRKCA	8	PRKCA [cytosol] (R-HSA-58196) p-T497,T638,S657-PRKCA [cytosol] (R-HSA-4332337) p-T497-PRKCA [cytosol] (R-HSA-5218731) pT497,T638,S657-PRKCA [plasma membrane] (R-HSA-4332340) PRKCA [plasma membrane] (R-HSA-156469) p-T497,T638,S657-PRKCA [nucleoplasm] (R-HSA-5223292) PRKCA [photoreceptor disc membrane] (R-HSA-2648987) PRKCA [nucleoplasm] (R-HSA-450530)	0.482	2

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