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HS(4)-AGRN [plasma membrane]
Stable Identifier
R-RNO-2076654
Type
Protein [EntityWithAccessionedSequence]
Species
Rattus norvegicus
Compartment
plasma membrane
Synonyms
P25304
Locations in the PathwayBrowser
Expand all
Metabolism (Rattus norvegicus)
Metabolism of carbohydrates (Rattus norvegicus)
Glycosaminoglycan metabolism (Rattus norvegicus)
Heparan sulfate/heparin (HS-GAG) metabolism (Rattus norvegicus)
HS-GAG biosynthesis (Rattus norvegicus)
Some HSPGs are secreted to the plasma membrane (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(4)-PGs [plasma membrane] (Rattus norvegicus)
HS(4)-AGRN [plasma membrane] (Rattus norvegicus)
Metabolism of vitamins and cofactors (Rattus norvegicus)
Metabolism of fat-soluble vitamins (Rattus norvegicus)
Retinoid metabolism and transport (Rattus norvegicus)
CR:atREs binds apoE and HSPG (Rattus norvegicus)
CR:atREs:HSPG:apoE [plasma membrane] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(4)-PGs [plasma membrane] (Rattus norvegicus)
HS(4)-AGRN [plasma membrane] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(4)-PGs [plasma membrane] (Rattus norvegicus)
HS(4)-AGRN [plasma membrane] (Rattus norvegicus)
LRPs transport extracellular CR:atREs:HSPG:apoE to cytosol (Rattus norvegicus)
CR:atREs:HSPG:apoE [early endosome] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(4)-PGs [plasma membrane] (Rattus norvegicus)
HS(4)-AGRN [plasma membrane] (Rattus norvegicus)
CR:atREs:HSPG:apoE [plasma membrane] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(4)-PGs [plasma membrane] (Rattus norvegicus)
HS(4)-AGRN [plasma membrane] (Rattus norvegicus)
Sensory Perception (Rattus norvegicus)
Visual phototransduction (Rattus norvegicus)
Retinoid metabolism and transport (Rattus norvegicus)
CR:atREs binds apoE and HSPG (Rattus norvegicus)
CR:atREs:HSPG:apoE [plasma membrane] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(4)-PGs [plasma membrane] (Rattus norvegicus)
HS(4)-AGRN [plasma membrane] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(4)-PGs [plasma membrane] (Rattus norvegicus)
HS(4)-AGRN [plasma membrane] (Rattus norvegicus)
LRPs transport extracellular CR:atREs:HSPG:apoE to cytosol (Rattus norvegicus)
CR:atREs:HSPG:apoE [early endosome] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(4)-PGs [plasma membrane] (Rattus norvegicus)
HS(4)-AGRN [plasma membrane] (Rattus norvegicus)
CR:atREs:HSPG:apoE [plasma membrane] (Rattus norvegicus)
HSPGs [plasma membrane] (Rattus norvegicus)
HS(4)-PGs [plasma membrane] (Rattus norvegicus)
HS(4)-AGRN [plasma membrane] (Rattus norvegicus)
External Reference Information
External Reference
UniProt:P25304 Agrn
Gene Names
Agrn, Agrin
Chain
chain:1-1959, chain:27-995, chain:996-1959, chain:996-1754, chain:1755-1959
Reference Genes
BioGPS Gene:25592 Agrn
KEGG Gene (Rattus norvegicus):25592 Agrn
Monarch:25592 Agrn
NCBI Gene:25592 Agrn
Reference Transcript
RefSeq:NM_175754.1 Agrn
Participates
as a member of
HS(4)-PGs [plasma membrane] (Rattus norvegicus)
Other forms of this molecule
Agrn [extracellular region]
AGRN(30-2045) [lysosomal lumen]
HS(6)-AGRN [lysosomal lumen]
HS(1)-AGRN [Golgi lumen]
HS(6)-AGRN [plasma membrane]
HS(2)-AGRN [plasma membrane]
HS(1)-AGRN [plasma membrane]
HS(3)-AGRN [plasma membrane]
HS(5)-AGRN [plasma membrane]
AGRN(30-2045) [extracellular region]
Gal-Gal-Xyl-AGRN [Golgi lumen]
GlcA-Gal-Gal-Xyl-AGRN [Golgi lumen]
Gal-Xyl-AGRN [Golgi lumen]
XylS-AGRN(30-2045) [Golgi lumen]
AGRN(30-2045) [Golgi lumen]
Heparan(3)-AGRN [Golgi lumen]
Heparan(4)-AGRN [Golgi lumen]
Heparan(2)-AGRN [Golgi lumen]
Heparan(1)-AGRN [Golgi lumen]
Heparan-AGRN [Golgi lumen]
HS(5)-AGRN [Golgi lumen]
HS(6)-AGRN [Golgi lumen]
HS(4)-AGRN [Golgi lumen]
HS(3)-AGRN [Golgi lumen]
HS(2)-AGRN [Golgi lumen]
Inferred From
HS(4)-AGRN [plasma membrane]
(Homo sapiens)
Modified Residues
Name
O-xylosyl-L-serine (ChEBI:63657) at unknown position
Modification
beta-D-GlcA-(1->4)-alpha-D-GlcNS-(1->4)-beta-D-IdoA2S-(1->4)-alpha-D-GlcNS3S-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl-yl group
PsiMod Name
O-xylosyl-L-serine
PsiMod Definition
A protein modification that effectively converts an L-serine residue to O3-xylosylserine.
Cross References
RefSeq
NP_786930.1
PRO
P25304
RGD
2067
PDB
3V64
,
3V65
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