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Aff4 [nucleoplasm]
Stable Identifier
R-RNO-8932788
Type
Protein [EntityWithAccessionedSequence]
Species
Rattus norvegicus
Compartment
nucleoplasm
Synonyms
AFF4, D3ZSX2
Locations in the PathwayBrowser
Expand all
Gene expression (Transcription) (Rattus norvegicus)
RNA Polymerase II Transcription (Rattus norvegicus)
RNA Polymerase II Pre-transcription Events (Rattus norvegicus)
2-4 nt.backtracking of Pol II complex on the template leading to elongation pausing (Rattus norvegicus)
Paused processive elongation complex [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
7-14 nt. Backtracking of Pol II complex on the template leading to elongation arrest (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Abortive termination of elongation after arrest (Rattus norvegicus)
Aborted elongation complex after arrest [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Elongating transcript encounters a lesion in the template (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Resumption of elongation after recovery from pausing (Rattus norvegicus)
Paused processive elongation complex [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
TFIIS-mediated recovery of elongation from arrest (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
RNA Polymerase II Transcription Elongation (Rattus norvegicus)
Addition of nucleotides leads to transcript elongation (Rattus norvegicus)
Elongation complex [nucleoplasm] (Rattus norvegicus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Formation of RNA Pol II elongation complex (Rattus norvegicus)
Hyperphosphorylation (Ser2) of RNA Pol II CTD by P-TEFb complex (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Recruitment of elongation factors to form elongation complex (Rattus norvegicus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Elongation complex [nucleoplasm] (Rattus norvegicus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Pol II elongation complex moves on the template as transcript elongates (Rattus norvegicus)
Elongation complex prior to separation [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Separation of elongating transcript from template (Rattus norvegicus)
Elongation complex prior to separation [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
Elongation complex with separated and uncleaved transcript [nucleoplasm] (Rattus norvegicus)
Aff4 [nucleoplasm] (Rattus norvegicus)
External Reference Information
External Reference
UniProt:D3ZSX2
Gene Names
Aff4
Reference Genes
BioGPS Gene:303132 Aff4
ENSEMBL:ENSRNOG00000006965
Monarch:303132 Aff4
NCBI Gene:303132 Aff4
UCSC:D3ZSX2 Aff4
Reference Transcript
RefSeq:XM_008767684.2 Aff4
RefSeq:XM_006246263.3 Aff4
Other Identifiers
10733484
1374548_at
1378170_at
1394682_at
1397386_at
17645759
303132
5711506
5767867
5827562
5842156
5871567
5893921
5941664
5961661
5986992
6035587
6146684
6158820
6193712
6210505
6264856
6282086
6287076
6372481
6374902
6430326
6438951
6486008
6520080
6540112
6548150
6568791
6616817
6638047
6646023
6655755
6668453
6672570
A_44_P1020105
A_44_P1034030
A_44_P270510
A_44_P606762
A_44_P684922
A_64_P078393
GE1123764
GE1218249
GE1230155
GE1260269
GE18071
GO:0000791
GO:0001650
GO:0005634
GO:0005654
GO:0005694
GO:0005730
GO:0007286
GO:0008023
GO:0010468
GO:0022414
GO:0030154
GO:0043226
GO:0048856
ILMN_1371918
PH_rn_0008085
rc_AI010593_at
Participates
as an output of
Elongating transcript encounters a lesion in the template (Rattus norvegicus)
as a component of
Aborted elongation complex after arrest [nucleoplasm] (Rattus norvegicus)
Paused processive elongation complex [nucleoplasm] (Rattus norvegicus)
Elongation complex with separated and uncleaved transcript [nucleoplasm] (Rattus norvegicus)
Elongation complex prior to separation [nucleoplasm] (Rattus norvegicus)
Processive elongation complex [nucleoplasm] (Rattus norvegicus)
Early elongation complex with hyperphosphorylated Pol II CTD [nucleoplasm] (Rattus norvegicus)
as an input of
Hyperphosphorylation (Ser2) of RNA Pol II CTD by P-TEFb complex (Rattus norvegicus)
Inferred From
AFF4 [nucleoplasm]
(Homo sapiens)
Cross References
ENSEMBL
ENSRNOG00000006965
,
ENSRNOT00000009440
,
ENSRNOP00000009440
RGD
1311694
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