Reactome | RPD3 [nucleoplasm]

RPD3 [nucleoplasm]

Stable Identifier

R-SCE-4616030

Type

Protein [EntityWithAccessionedSequence]

Species

Saccharomyces cerevisiae

Compartment

nucleoplasm

Synonyms

monoSUMO1-K444,K476-HDAC1, P32561

Locations in the PathwayBrowser for interactor UniProt:P47103 CYP7

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External Reference Information

External Reference

UniProt:P32561

Gene Names

RPD3

Reference Genes

BioGPS Gene:855386 RPD3

ENSEMBL:YNL330C

KEGG:sce:YNL330C RPD3

Monarch:855386 RPD3

NCBI Gene:855386 RPD3

SGD:YNL330C

UCSC:P32561 RPD3

Reference Transcript

RefSeq:NM_001183168.1 RPD3

Other Identifiers

1774173_at

855386

9200_at

GO:0000082

GO:0000083

GO:0000086

GO:0000117

GO:0000118

GO:0000122

GO:0000278

GO:0001302

GO:0003674

GO:0003713

GO:0003714

GO:0004407

GO:0005515

GO:0005575

GO:0005634

GO:0005694

GO:0005737

GO:0006260

GO:0006310

GO:0006325

GO:0006334

GO:0006354

GO:0006355

GO:0006357

GO:0006360

GO:0006366

GO:0006368

GO:0006979

GO:0006995

GO:0006997

GO:0008150

GO:0008270

GO:0009408

GO:0016043

GO:0016239

GO:0016479

GO:0016570

GO:0016575

GO:0016787

GO:0030174

GO:0030674

GO:0031507

GO:0031939

GO:0032041

GO:0032221

GO:0033043

GO:0033698

GO:0034399

GO:0034503

GO:0034605

GO:0042594

GO:0043167

GO:0043231

GO:0044804

GO:0045128

GO:0045944

GO:0048285

GO:0051038

GO:0051052

GO:0051321

GO:0051726

GO:0061186

GO:0061188

GO:0061587

GO:0070210

GO:0070211

GO:0070550

GO:0070822

GO:0070932

GO:0070933

GO:1902494

Participates

as an output of

SUMOylation of HDAC1 with SUMO1 (Saccharomyces cerevisiae)

Other forms of this molecule

RPD3 [nucleoplasm]

Inferred From

monoSUMO1-K444,K476-HDAC1 [nucleoplasm] (Homo sapiens)

Modified Residues

Name

sumoylated lysine (monoSUMO1 [nucleoplasm]) at 444 (in Homo sapiens)

Coordinate

444

Modification

monoSUMO1 [nucleoplasm]

PsiMod Name

sumoylated lysine

PsiMod Definition

A protein modification that effectively crosslinks the N6-amino of a peptidyl lysine with the carboxyl-terminal glycine of a sumo (Small Ubiquitin-related MOdifier) protein.

Name

sumoylated lysine (monoSUMO1 [nucleoplasm]) at 476 (in Homo sapiens)

Coordinate

476

Modification

monoSUMO1 [nucleoplasm]

PsiMod Name

sumoylated lysine

PsiMod Definition

A protein modification that effectively crosslinks the N6-amino of a peptidyl lysine with the carboxyl-terminal glycine of a sumo (Small Ubiquitin-related MOdifier) protein.

Cross References

RefSeq

NP_014069.1

ENSEMBL

YNL330C, YNL330C, YNL330C_mRNA

PRO

P32561

PDB

7YI4, 8HY0, 8IHN, 8KD5, 8W9F, 8IHT, 7YI5, 8KD7, 7YI3, 8KD6, 8HPO, 8KC7, 8TOF, 8GA8, 8KD4, 8W9C, 8JHO, 8W9E, 8KD2, 7YI0, 7YI2, 8HXY, 8KD3, 8W9D, 8HXX

Interactors (20)

Accession	#Entities	Entities	Confidence Score	Evidence (IntAct)
UniProt:P22579	3	SIN3 [nucleoplasm] (R-SCE-349685) SIN3 [nucleoplasm] (R-SCE-351657) SIN3 [nucleoplasm] (R-SCE-4086071)	0.905	28
UniProt:P38255 RXT2			0.888	12
UniProt:Q03010	1	UME1 [nucleoplasm] (R-SCE-212223-2)	0.848	11
UniProt:Q04779 RCO1			0.848	13
UniProt:Q08923 CTI6			0.848	10
UniProt:P50947	2	monoSUMO1-K195-ING2 [nucleoplasm] (R-SCE-4086075-2) ING2 [nucleoplasm] (R-SCE-3215167-2)	0.848	10
UniProt:P40505	2	SDS3 [nucleoplasm] (R-SCE-6782790-2) SDS3 [nucleoplasm] (R-SCE-351696-2)	0.802	5
UniProt:Q12432 EAF3			0.802	12
UniProt:P34233 ASH1			0.775	5
UniProt:P38429	2	SAP30 [nucleoplasm] (R-SCE-351693) SAP30 [nucleoplasm] (R-SCE-351698)	0.744	8
UniProt:Q07458 RXT3			0.725	4
UniProt:P31385	3	DEP1 [nucleoplasm] (R-SCE-6782790) DEP1 [nucleoplasm] (R-SCE-351696) DEP1 [nucleoplasm] (R-SCE-4650034)	0.725	4
UniProt:P14922	3	CYC8 [nucleoplasm] (R-SCE-8849395) CYC8 [nucleoplasm] (R-SCE-4754224) CYC8 [nucleoplasm] (R-SCE-1629833)	0.697	6
UniProt:Q03214 ECM5			0.597	5
UniProt:P16649 TUP1			0.589	2
UniProt:Q08032	1	CDC45 [nucleoplasm] (R-SCE-68563)	0.527	2
UniProt:Q03213 HOT1			0.524	3
UniProt:P53691 PPID			0.508	2
UniProt:P47103 CYP7			0.508	2
UniProt:P53127 SNT2			0.462	3