Reactome | col4a6 [endoplasmic reticulum lumen]

col4a6 [endoplasmic reticulum lumen]

Stable Identifier

R-XTR-2023561

Type

Protein [EntityWithAccessionedSequence]

Species

Xenopus tropicalis

Compartment

endoplasmic reticulum lumen

Synonyms

3x4Hyp-3Hyp-GalHyl-COL4A6, A0A803JRW2

Locations in the PathwayBrowser

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External Reference Information

External Reference

UniProt:A0A803JRW2

Gene Names

col4a6

Reference Genes

BioGPS Gene:100493153 col4a6

ENSEMBL:ENSXETG00000001547

KEGG Gene (Xenopus tropicalis):100493153 col4a6

Monarch:100493153 col4a6

NCBI Gene:100493153 col4a6

Reference Transcript

RefSeq:XM_012968993.2 col4a6

Other Identifiers

100493153

GO:0005198

GO:0005201

GO:0005576

GO:0005581

GO:0005587

GO:0005604

GO:0005615

GO:0016020

GO:0023052

GO:0030198

GO:0030312

GO:0031012

GO:0038063

GO:0110165

Participates

as a candidate of

3,4-Hyp 5-Gal-Hyl collagen propeptides [endoplasmic reticulum lumen] (Xenopus tropicalis)

as a component of

C-linked procollagen alpha-5(IV)X2 alpha-6(IV) trimer [endoplasmic reticulum lumen] (Xenopus tropicalis)

Other forms of this molecule

col4a6 [endoplasmic reticulum lumen]

col4a6 [extracellular region]

Inferred From

Alpha-6(IV) chains [endoplasmic reticulum lumen] (Homo sapiens)

3x4Hyp-3Hyp-GalHyl-COL4A6 [endoplasmic reticulum lumen] (Homo sapiens)

Modified Residues

Name

(2S,4R)-4-hydroxyproline at unknown position

PsiMod Name

(2S,4R)-4-hydroxyproline

PsiMod Definition

A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline

Name

(2S,4R)-4-hydroxyproline at unknown position

PsiMod Name

(2S,4R)-4-hydroxyproline

PsiMod Definition

A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline

Name

(2S,4R)-4-hydroxyproline at unknown position

PsiMod Name

(2S,4R)-4-hydroxyproline

PsiMod Definition

A protein modification that effectively converts an L-proline residue to 4-hydroxy-L-proline

Name

(2S,3S)-3-hydroxyproline at unknown position

PsiMod Name

(2S,3S)-3-hydroxyproline

PsiMod Definition

A protein modification that effectively converts an L-proline residue to 3-hydroxy-L-proline.

Name

O5-galactosyl-L-hydroxylysine at unknown position

PsiMod Name

O5-galactosyl-L-hydroxylysine

PsiMod Definition

A protein modification that effectively converts an L-lysine residue to O5-galactosyl-L-hydroxylysine.

Cross References

RefSeq

XP_012824447.1

Ensembl

ENSXETG00000001547, ENSXETP00000110757, ENSXETT00000120007

Xenbase

XB-GENE-6034568