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bgn [lysosomal lumen]
Stable Identifier
R-XTR-2065266
Type
Protein [EntityWithAccessionedSequence]
Species
Xenopus tropicalis
Compartment
lysosomal lumen
Synonyms
D2,4(S)2-BGN, Q0P4I3
Locations in the PathwayBrowser
Expand all
Metabolism (Xenopus tropicalis)
Metabolism of carbohydrates (Xenopus tropicalis)
Glycosaminoglycan metabolism (Xenopus tropicalis)
Chondroitin sulfate/dermatan sulfate metabolism (Xenopus tropicalis)
CS/DS degradation (Xenopus tropicalis)
DSPG and CSPG translocate to the lysosome for degradation (Xenopus tropicalis)
DSPGs [lysosomal lumen] (Xenopus tropicalis)
D2,4(S)2-PGs [lysosomal lumen] (Xenopus tropicalis)
bgn [lysosomal lumen] (Xenopus tropicalis)
External Reference Information
External Reference
UniProt:Q0P4I3
Gene Names
bgn
Reference Genes
BioGPS Gene:780007 bgn
ENSEMBL:ENSXETG00000012934
KEGG Gene (Xenopus tropicalis):780007 bgn
Monarch:780007 bgn
NCBI Gene:780007 bgn
Reference Transcript
RefSeq:NM_001079084.2 bgn
Other Identifiers
780007
GO:0005515
GO:0005576
Participates
as a member of
D2,4(S)2-PGs [lysosomal lumen] (Xenopus tropicalis)
Other forms of this molecule
bgn [lysosomal lumen]
bgn [lysosomal lumen]
bgn [lysosomal lumen]
bgn [lysosomal lumen]
bgn [lysosomal lumen]
bgn [lysosomal lumen]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [extracellular region]
bgn [extracellular region]
bgn [extracellular region]
bgn [Golgi lumen]
bgn [Golgi lumen]
bgn [extracellular region]
bgn [extracellular region]
bgn [extracellular region]
Inferred From
D2,4(S)2-BGN [lysosomal lumen]
(Homo sapiens)
Modified Residues
Name
O-xylosyl-L-serine (ChEBI:63517) at unknown position
Modification
beta-D-GalNAc-(1->4)-beta-D-IdoA2S-(1->3)-beta-D-GalNAc4S-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl-yl group
PsiMod Name
O-xylosyl-L-serine
PsiMod Definition
A protein modification that effectively converts an L-serine residue to O3-xylosylserine.
Cross References
RefSeq
NP_001072552.1
Ensembl
ENSXETT00000028317
,
ENSXETP00000028317
,
ENSXETG00000012934
Xenbase
XB-GENE-1003139
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