Reactome | hist2h2bf [nucleoplasm]

hist2h2bf [nucleoplasm]

Stable Identifier

R-XTR-6782552-7

Type

Protein [EntityWithAccessionedSequence]

Species

Xenopus tropicalis

Compartment

nucleoplasm

Synonyms

Ub-HIST1H2BC, Q28D68

Locations in the PathwayBrowser

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Metabolism of proteins (Xenopus tropicalis)

- Post-translational protein modification (Xenopus tropicalis)
  - Deubiquitination (Xenopus tropicalis)
    - Ub-specific processing proteases (Xenopus tropicalis)
      - USP3,SAGA deubiquitinate Histone H2A,H2B (Xenopus tropicalis)
        
        USP3,SAGA:Ub-histone H2A, Ub-histone H2B [nucleoplasm] (Xenopus tropicalis)
        
        Ub-histone H2A, Ub-histone H2B [nucleoplasm] (Xenopus tropicalis)
        
        Ub-histone H2B [nucleoplasm] (Xenopus tropicalis)
        
        Homologues of Ub-HIST1H2BC [nucleoplasm] (Xenopus tropicalis)
        
        hist2h2bf [nucleoplasm] (Xenopus tropicalis)
        
        Ub-histone HIST1H2B [nucleoplasm] (Xenopus tropicalis)
        
        Homologues of Ub-HIST1H2BC [nucleoplasm] (Xenopus tropicalis)
        
        hist2h2bf [nucleoplasm] (Xenopus tropicalis)
  - Protein ubiquitination (Xenopus tropicalis)
    - E3 ubiquitin ligases ubiquitinate target proteins (Xenopus tropicalis)
      - RNF20:RNF40 monoubiquitinates Histone H2B (Xenopus tropicalis)
        
        Ub-histone HIST1H2B [nucleoplasm] (Xenopus tropicalis)
        
        Homologues of Ub-HIST1H2BC [nucleoplasm] (Xenopus tropicalis)
        
        hist2h2bf [nucleoplasm] (Xenopus tropicalis)

External Reference Information

External Reference

UniProt:Q28D68

Gene Names

hist2h2bf

Reference Genes

BioGPS Gene:100495396 hist2h2bf

BioGPS Gene:101731959 hist2h2bf

BioGPS Gene:101733171 hist2h2bf

BioGPS Gene:108648861 hist2h2bf

BioGPS Gene:108648862 hist2h2bf

BioGPS Gene:108648863 hist2h2bf

BioGPS Gene:108648864 hist2h2bf

ENSEMBL:ENSXETG00000035260 hist2h2bf

ENSEMBL:ENSXETG00000035994 hist2h2bf

ENSEMBL:ENSXETG00000036050 hist2h2bf

ENSEMBL:ENSXETG00000036199

ENSEMBL:ENSXETG00000037343 hist2h2bf

ENSEMBL:ENSXETG00000038668 hist2h2bf

ENSEMBL:ENSXETG00000038729 hist2h2bf

ENSEMBL:ENSXETG00000039383 hist2h2bf

ENSEMBL:ENSXETG00000040576 hist2h2bf

ENSEMBL:ENSXETG00000041947 hist2h2bf

ENSEMBL:ENSXETG00000042082 hist2h2bf

ENSEMBL:ENSXETG00000043427 hist2h2bf

ENSEMBL:ENSXETG00000046804 hist2h2bf

ENSEMBL:ENSXETG00000048855 hist2h2bf

KEGG Gene (Xenopus tropicalis):100495396 hist2h2bf

KEGG Gene (Xenopus tropicalis):101731959 hist2h2bf

KEGG Gene (Xenopus tropicalis):101733171 hist2h2bf

KEGG Gene (Xenopus tropicalis):108648861 hist2h2bf

KEGG Gene (Xenopus tropicalis):108648862 hist2h2bf

KEGG Gene (Xenopus tropicalis):108648863 hist2h2bf

KEGG Gene (Xenopus tropicalis):108648864 hist2h2bf

KEGG Gene (Xenopus tropicalis):108648866 hist2h2bf

KEGG Gene (Xenopus tropicalis):116407582 hist2h2bf

KEGG Gene (Xenopus tropicalis):116407584 hist2h2bf

KEGG Gene (Xenopus tropicalis):116407585 hist2h2bf

KEGG Gene (Xenopus tropicalis):116407586 hist2h2bf

KEGG Gene (Xenopus tropicalis):116407587 hist2h2bf

KEGG Gene (Xenopus tropicalis):116407588 hist2h2bf

KEGG Gene (Xenopus tropicalis):116407589 hist2h2bf

KEGG Gene (Xenopus tropicalis):116407590 hist2h2bf

KEGG Gene (Xenopus tropicalis):116407592 hist2h2bf

Monarch:100495396 hist2h2bf

Monarch:101731959 hist2h2bf

Monarch:101733171 hist2h2bf

Monarch:108648861 hist2h2bf

Monarch:108648862 hist2h2bf

Monarch:108648863 hist2h2bf

Monarch:108648864 hist2h2bf

NCBI Gene:100495396 hist2h2bf

NCBI Gene:101731959 hist2h2bf

NCBI Gene:101733171 hist2h2bf

NCBI Gene:108648861 hist2h2bf

NCBI Gene:108648862 hist2h2bf

NCBI Gene:108648863 hist2h2bf

NCBI Gene:108648864 hist2h2bf

Reference Transcript

Other Identifiers

100495396

101731959

101733171

108648861

108648863

108648864

108648866

116407582

116407584

116407585

116407586

116407587

116407588

116407589

116407590

116407592

GO:0000786

GO:0003677

GO:0005198

GO:0005622

GO:0005634

GO:0005694

GO:0006325

GO:0006334

GO:0030527

GO:0032991

GO:0043226

GO:0046982

GO:0065003

Participates

as a member of

Homologues of Ub-HIST1H2BC [nucleoplasm] (Xenopus tropicalis)

Other forms of this molecule

hist2h2bf [nucleoplasm]

Inferred From

Ub-HIST3H2BB [nucleoplasm] (Homo sapiens)

Ub-HIST2H2BF [nucleoplasm] (Homo sapiens)

Ub-HIST1H2BC [nucleoplasm] (Homo sapiens)

Ub-HIST1H2BN [nucleoplasm] (Homo sapiens)

Ub-HIST1H2BM [nucleoplasm] (Homo sapiens)

Ub-HIST1H2BH [nucleoplasm] (Homo sapiens)

Ub-HIST1H2BL [nucleoplasm] (Homo sapiens)

Ub-HIST1H2BD [nucleoplasm] (Homo sapiens)

Ub-HIST1H2BK [nucleoplasm] (Homo sapiens)

Modified Residues

Name

ubiquitinylated lysine (monoUb [nucleoplasm]) at 120 (in Homo sapiens)

Coordinate

120

Modification

monoUb [nucleoplasm]

PsiMod Name

ubiquitinylated lysine [MOD:01148]

PsiMod Definition

A protein modification that effectively crosslinks the N6-amino of a peptidyl lysine with the carboxyl-terminal glycine of a ubiquitin.

Cross References

RefSeq

XP_031748969.1, XP_031748971.1, XP_031748963.1, XP_031748970.1, XP_017952914.1, XP_031748968.1, XP_031748965.1, NP_001297031.1, XP_031748975.1, XP_031748966.1, XP_017952911.1, XP_002943313.1, XP_017952910.1, XP_017952912.1, XP_031748972.1, XP_031748967.1, XP_017952909.1, XP_004913866.1

Ensembl

ENSXETP00000107115, ENSXETT00000065266, ENSXETP00000108106, ENSXETT00000122418, ENSXETG00000046804, ENSXETG00000036199, ENSXETG00000043427, ENSXETG00000042082, ENSXETG00000046250, ENSXETP00000117225, ENSXETT00000119758, ENSXETT00000106187, ENSXETT00000106048, ENSXETP00000102924, ENSXETP00000111661, ENSXETG00000041947, ENSXETP00000063108, ENSXETT00000109894, ENSXETP00000119459, ENSXETT00000107096, ENSXETG00000048855, ENSXETP00000110625, ENSXETT00000121072

PDB

6FTX, 3C1B, 3C1C

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