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vcanb [Golgi lumen]
Stable Identifier
R-DRE-2064169
Type
Protein [EntityWithAccessionedSequence]
Species
Danio rerio
Compartment
Golgi lumen
Synonyms
chondroitin(3)-VCAN, Q75ZI3
Locations in the PathwayBrowser
Expand all
Metabolism (Danio rerio)
Metabolism of carbohydrates (Danio rerio)
Glycosaminoglycan metabolism (Danio rerio)
Chondroitin sulfate/dermatan sulfate metabolism (Danio rerio)
Chondroitin sulfate biosynthesis (Danio rerio)
CHST3,7 transfer SO4(2-) to position 6 of GalNAc on chondroitin chains (Danio rerio)
chondroitin(3)-core proteins [Golgi lumen] (Danio rerio)
vcanb [Golgi lumen] (Danio rerio)
CHSY1 transfers GalNAc to chondroitin (Danio rerio)
chondroitin(3)-core proteins [Golgi lumen] (Danio rerio)
vcanb [Golgi lumen] (Danio rerio)
Chondroitin can be sulfated on position 4 of GalNAc by CHST9, 11, 12 and 13 (Danio rerio)
chondroitin(3)-core proteins [Golgi lumen] (Danio rerio)
vcanb [Golgi lumen] (Danio rerio)
Dermatan sulfate biosynthesis (Danio rerio)
Dermatan-sulfate epimerase (DSE) converts chondroitin sulfate (CS) to dermatan sulfate (DS) (Danio rerio)
DSE,DSEL substrates [Golgi lumen] (Danio rerio)
chondroitin(3)-core proteins [Golgi lumen] (Danio rerio)
vcanb [Golgi lumen] (Danio rerio)
External Reference Information
External Reference
UniProt:Q75ZI3
Gene Names
vcanb
Reference Genes
BioGPS Gene:323465 vcanb
CTD Gene:323465 vcanb
ENSEMBL:ENSDARG00000009401
KEGG Gene (Danio rerio):323465 vcanb
Monarch:323465 vcanb
NCBI Gene:323465 vcanb
Reference Transcript
RefSeq:NM_214688.1 vcanb
Participates
as a member of
chondroitin(3)-core proteins [Golgi lumen] (Danio rerio)
Other forms of this molecule
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [Golgi lumen]
vcanb [extracellular region]
vcanb [extracellular region]
vcanb [extracellular region]
vcanb [lysosomal lumen]
vcanb [lysosomal lumen]
vcanb [extracellular region]
vcanb [extracellular region]
vcanb [extracellular region]
vcanb [lysosomal lumen]
vcanb [lysosomal lumen]
vcanb [lysosomal lumen]
vcanb [lysosomal lumen]
vcanb [lysosomal lumen]
Inferred From
chondroitin(3)-VCAN [Golgi lumen]
(Homo sapiens)
Modified Residues
Name
O-xylosyl-L-serine (ChEBI:63511) at unknown position
Modification
beta-D-GalNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-GalNAc-(1->4)-beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl-yl group
PsiMod Name
O-xylosyl-L-serine
PsiMod Definition
A protein modification that effectively converts an L-serine residue to O3-xylosylserine.
Cross References
RefSeq
NP_999853.1
ZFIN
ZDB-GENE-030131-2185
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