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RNPS1 [cytosol]
Stable Identifier
R-HSA-159256
Type
Protein [EntityWithAccessionedSequence]
Species
Homo sapiens
Compartment
cytosol
Locations in the PathwayBrowser
Expand all
Developmental Biology (Homo sapiens)
Nervous system development (Homo sapiens)
Axon guidance (Homo sapiens)
Signaling by ROBO receptors (Homo sapiens)
Regulation of expression of SLITs and ROBOs (Homo sapiens)
Translation of ROBO3.2 mRNA initiates NMD (Homo sapiens)
Exon Junction:UPF2:UPF3 Complex [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
Translated ROBO3.2 mRNA in complex with NMD-initiating UPF2 [cytosol] (Homo sapiens)
Exon Junction:UPF2:UPF3 Complex [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
Translation of ROBO3.2 mRNA is negatively regulated by NMD (Homo sapiens)
Exon Junction:UPF2:UPF3 Complex [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
Translated ROBO3.2 mRNA in complex with NMD-initiating UPF2 [cytosol] (Homo sapiens)
Exon Junction:UPF2:UPF3 Complex [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
Metabolism of RNA (Homo sapiens)
Nonsense-Mediated Decay (NMD) (Homo sapiens)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) (Homo sapiens)
SMG1 phosphorylates UPF1 (enhanced by Exon Junction Complex) (Homo sapiens)
SMG1:Phosphorylated UPF1:EJC:Translated mRNP [cytosol] (Homo sapiens)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Homo sapiens)
Exon Junction:UPF2:UPF3 Complex [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
SMG1:UPF1:EJC:Translated mRNP [cytosol] (Homo sapiens)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Homo sapiens)
Exon Junction:UPF2:UPF3 Complex [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
SMG6 hydrolyzes mRNA with premature termination codon (Homo sapiens)
Phosphorylated UPF1:SMG5:SMG7:SMG6:PP2A:Translated mRNP [cytosol] (Homo sapiens)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Homo sapiens)
Exon Junction:UPF2:UPF3 Complex [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
UPF1 binds an mRNP with a termination codon preceding an Exon Junction Complex (Homo sapiens)
SMG1:UPF1:EJC:Translated mRNP [cytosol] (Homo sapiens)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Homo sapiens)
Exon Junction:UPF2:UPF3 Complex [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Homo sapiens)
Exon Junction:UPF2:UPF3 Complex [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
p-4S-UPF1 recruits SMG5, SMG7, SMG6, PNRC2, DCP1A, and PP2A (Homo sapiens)
Phosphorylated UPF1:SMG5:SMG7:SMG6:PP2A:Translated mRNP [cytosol] (Homo sapiens)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Homo sapiens)
Exon Junction:UPF2:UPF3 Complex [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
SMG1:Phosphorylated UPF1:EJC:Translated mRNP [cytosol] (Homo sapiens)
Translated mRNA Complex with Premature Termination Codon Preceding Exon Junction [cytosol] (Homo sapiens)
Exon Junction:UPF2:UPF3 Complex [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
Processing of Capped Intron-Containing Pre-mRNA (Homo sapiens)
Transport of Mature Transcript to Cytoplasm (Homo sapiens)
Transport of Mature mRNA derived from an Intron-Containing Transcript (Homo sapiens)
Transport of the export-competent mRNP complex through the NPC (Homo sapiens)
NPC:NXF1:NXT1:EJC:CBC:mRNA [cytosol] (Homo sapiens)
EJC [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
mRNP complex dissociates from cytosolic face of NPC (Homo sapiens)
NPC:NXF1:NXT1:EJC:CBC:mRNA [cytosol] (Homo sapiens)
EJC [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
mRNA:CBC:EJC:POLDIP3 [cytosol] (Homo sapiens)
EJC [cytosol] (Homo sapiens)
RNPS1 [cytosol] (Homo sapiens)
External Reference Information
External Reference
UniProt:Q15287 RNPS1
Gene Names
RNPS1, LDC2
Chain
chain:1-305
Reference Genes
BioGPS Gene:10921 RNPS1
COSMIC (genes):RNPS1 RNPS1
CTD Gene:10921 RNPS1
dbSNP Gene:10921 RNPS1
ENSEMBL:ENSG00000205937.12 RNPS1
HGNC:10080 RNPS1
KEGG Gene (Homo sapiens):10921 RNPS1
Monarch:10921 RNPS1
NCBI Gene:10921 RNPS1
OMIM:606447 RNPS1
UCSC:Q15287 RNPS1
Reference Transcript
RefSeq:NM_001286625.1 RNPS1
RefSeq:XM_005255049.3 RNPS1
RefSeq:NM_001286627.1 RNPS1
RefSeq:NM_080594.3 RNPS1
RefSeq:NM_006711.4 RNPS1
RefSeq:NM_001286626.1 RNPS1
RefSeq:XM_017022874.1 RNPS1
RefSeq:XM_005255048.1 RNPS1
Other Identifiers
0000610181
0001450088
10921
11717606_x_at
11745770_s_at
11745771_s_at
11747424_x_at
11748885_x_at
11755857_s_at
16656367
16656369
16656371
16656375
16823097
16965079
17119376
17123494
17123496
18671090
18671091
18671092
18671093
18671094
18671095
18671096
18671097
18671098
200060_PM_s_at
200060_s_at
207939_PM_x_at
207939_x_at
2718670
2718671
2718672
2718673
2718674
2718676
2718677
2718685
2718687
2718689
2793324
2793325
36186_at
3676670
3676671
3676672
3676673
3676674
3676675
3676676
3676682
3676684
3676685
3676686
3676689
3676692
3676693
3676694
3676698
3676699
3676700
3676701
3676702
3676703
3676704
3676705
7892674
7892847
7892939
7892944
7893073
7893528
7893639
7893928
7893991
7894078
7894428
7894459
7894906
7895203
7896277
7998774
A_23_P152272
A_24_P725630
GE57746
GO:0000184
GO:0000381
GO:0000398
GO:0003676
GO:0003723
GO:0003730
GO:0005515
GO:0005622
GO:0005634
GO:0005654
GO:0005737
GO:0005829
GO:0006351
GO:0006397
GO:0008380
GO:0012501
GO:0016071
GO:0016607
GO:0032991
GO:0035145
GO:0043065
GO:0043226
GO:0048025
GO:0061574
HMNXSV003041450
ILMN_1676503
ILMN_1691843
ILMN_2375386
L37368_at
PH_hs_0029849
PH_hs_0032827
PH_hs_0036106
TC04000125.hg
TC04001908.hg
TC16000782.hg
g12804496_3p_a_at
g6857825_3p_x_at
Participates
as a component of
Exon Junction:UPF2:UPF3 Complex [cytosol] (Homo sapiens)
EJC [cytosol] (Homo sapiens)
Other forms of this molecule
RNPS1 [nucleoplasm]
Inferred To
rnp-5 [cytosol]
(Caenorhabditis elegans)
RNPS1 [cytosol]
(Bos taurus)
RNPS1 [cytosol]
(Canis familiaris)
RNPS1 [cytosol]
(Dictyostelium discoideum)
RNPS1 [cytosol]
(Gallus gallus)
RNPS1 [cytosol]
(Plasmodium falciparum)
RNPS1 [cytosol]
(Schizosaccharomyces pombe)
RNPS1 [cytosol]
(Sus scrofa)
Ghost homologue of RNPS1 [cytosol]
(Saccharomyces cerevisiae)
RnpS1 [cytosol]
(Drosophila melanogaster)
Rnps1 [cytosol]
(Mus musculus)
Rnps1 [cytosol]
(Rattus norvegicus)
rnps1 [cytosol]
(Danio rerio)
rnps1 [cytosol]
(Xenopus tropicalis)
Cross References
RefSeq
XP_016878363.1
,
XP_005255106.1
,
NP_001273555.1
,
NP_542161.1
,
NP_001273554.1
,
NP_006702.1
,
XP_005255105.1
,
NP_001273556.1
OpenTargets
ENSG00000205937
HPA
ENSG00000205937-RNPS1
GeneCards
Q15287
Ensembl
ENST00000568631
,
ENST00000301730
,
ENST00000566458
,
ENST00000565678
,
ENST00000397086
,
ENSP00000456352
,
ENSP00000380275
,
ENSP00000315859
,
ENSG00000205937
,
ENSP00000301730
,
ENST00000320225
,
ENSP00000457820
,
ENSP00000457723
PRO
Q15287
Pharos - Targets
Q15287
PDB
4A8X
Interactors (12)
Accession
#Entities
Entities
Confidence Score
Evidence (IntAct)
UniProt:Q9BZI7 UPF3B
2
UPF3B [nucleoplasm]
(R-HSA-156776)
UPF3B [cytosol]
(R-HSA-159258)
0.643
3
UniProt:Q9Y2W1 THRAP3
1
THRAP3 [nucleoplasm]
(R-HSA-8932115)
0.589
2
UniProt:Q08170 SRSF4
1
SRSF4 [nucleoplasm]
(R-HSA-72024)
0.573
2
UniProt:Q07955 SRSF1
1
SRSF1 [nucleoplasm]
(R-HSA-72031)
0.573
2
UniProt:O94906 PRPF6
1
PRPF6 [nucleoplasm]
(R-HSA-71881)
0.564
2
UniProt:Q9UJV9 DDX41
4
DDX41 [nucleoplasm]
(R-HSA-9769601)
DDX41 [cytosol]
(R-HSA-3134807)
K48polyUb-DDX41 [cytosol]
(R-HSA-3134942)
K48polyUb-DDX41 [cytosol]
(R-HSA-3134941)
0.564
2
UniProt:P38919 EIF4A3
2
EIF4A3 [cytosol]
(R-HSA-927868)
EIF4A3 [nucleoplasm]
(R-HSA-8849149)
0.558
4
UniProt:P84103 SRSF3
1
SRSF3 [nucleoplasm]
(R-HSA-72035)
0.556
3
UniProt:Q9UGI0 ZRANB1
1
ZRANB1 [cytosol]
(R-HSA-6781939)
0.556
3
UniProt:Q9NRD5 PICK1
2
PICK1 [plasma membrane]
(R-HSA-416989)
PICK1 [endocytic vesicle membrane]
(R-HSA-417017)
0.556
3
UniProt:Q16629 SRSF7
1
SRSF7 [nucleoplasm]
(R-HSA-72029)
0.556
3
UniProt:Q13242 SRSF9
1
SRSF9 [nucleoplasm]
(R-HSA-72037)
0.556
3
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